White spot syndrome virus (isolate Shrimp/China/Tongan/1996) (WSSV) (White spot bacilliform virus)

Taxonomy: Viruses; Naldaviricetes; Nimaviridae; Whispovirus; White spot syndrome virus; Shrimp white spot syndrome virus

Average proteome isoelectric point is 7.37

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 524 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q8VAG7|Q8VAG7_WSSVS Wsv449 OS=White spot syndrome virus (isolate Shrimp/China/Tongan/1996) OX=654913 PE=4 SV=1
MM1 pKa = 6.9VFSWLMSDD9 pKa = 3.8RR10 pKa = 11.84SIFKK14 pKa = 7.94TTNFTSTLNAGTEE27 pKa = 4.18FSTAAAAASEE37 pKa = 4.2VEE39 pKa = 4.35EE40 pKa = 4.25EE41 pKa = 4.75DD42 pKa = 4.34EE43 pKa = 4.07EE44 pKa = 4.6LLLFFLVSLMIEE56 pKa = 3.97VSTKK60 pKa = 10.36FEE62 pKa = 3.86TAFFKK67 pKa = 10.51TCFLVSVIAPIILSVLEE84 pKa = 4.73EE85 pKa = 3.93IASFSCLALEE95 pKa = 4.04LAMRR99 pKa = 11.84RR100 pKa = 11.84SHH102 pKa = 7.23ISLGCPCSFVINSSIFFLLSFPFEE126 pKa = 4.03ILVTICMANTIDD138 pKa = 3.62FSEE141 pKa = 4.42YY142 pKa = 10.5LSEE145 pKa = 4.61LLCLLLMLLFSVV157 pKa = 4.54

Molecular weight: 17.53 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0A0Y4F0|A0A0A0Y4F0_WSSVS Wsv405 OS=White spot syndrome virus (isolate Shrimp/China/Tongan/1996) OX=654913 PE=4 SV=1
MM1 pKa = 7.18VARR4 pKa = 11.84SSKK7 pKa = 8.23TKK9 pKa = 10.2SRR11 pKa = 11.84RR12 pKa = 11.84GSKK15 pKa = 9.86KK16 pKa = 9.73RR17 pKa = 11.84STTAGRR23 pKa = 11.84ISKK26 pKa = 9.98RR27 pKa = 11.84RR28 pKa = 11.84SPSMKK33 pKa = 9.48KK34 pKa = 9.83RR35 pKa = 11.84AGKK38 pKa = 10.17KK39 pKa = 8.75SSTVRR44 pKa = 11.84RR45 pKa = 11.84RR46 pKa = 11.84SSKK49 pKa = 10.18SGKK52 pKa = 9.73KK53 pKa = 9.68SGARR57 pKa = 11.84KK58 pKa = 9.36SRR60 pKa = 11.84RR61 pKa = 3.37

Molecular weight: 6.82 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

524

0

524

124231

60

6077

237.1

26.61

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.777 ± 0.186

1.924 ± 0.09

5.113 ± 0.111

6.523 ± 0.171

4.878 ± 0.119

5.311 ± 0.246

1.996 ± 0.068

5.978 ± 0.095

6.718 ± 0.158

9.0 ± 0.159

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.82 ± 0.061

5.413 ± 0.142

4.665 ± 0.171

2.871 ± 0.133

5.198 ± 0.109

9.95 ± 0.217

6.017 ± 0.118

6.219 ± 0.081

0.933 ± 0.048

2.695 ± 0.063
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski