Conservatibacter flavescens

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Conservatibacter

Average proteome isoelectric point is 6.49

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2416 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2M8S431|A0A2M8S431_9PAST Glutamine--tRNA ligase OS=Conservatibacter flavescens OX=28161 GN=glnS PE=3 SV=1
MM1 pKa = 7.65AIVGLFYY8 pKa = 11.01GSDD11 pKa = 3.2TGNTEE16 pKa = 4.47NIAKK20 pKa = 9.24MIQKK24 pKa = 9.56QLGSDD29 pKa = 3.38LVDD32 pKa = 3.09IRR34 pKa = 11.84DD35 pKa = 3.42IAKK38 pKa = 10.28SSKK41 pKa = 10.35EE42 pKa = 3.95DD43 pKa = 3.02IEE45 pKa = 5.73AYY47 pKa = 10.19DD48 pKa = 4.65FIMIGIPTWYY58 pKa = 10.03YY59 pKa = 11.56GEE61 pKa = 4.97AQADD65 pKa = 3.42WDD67 pKa = 4.41DD68 pKa = 4.32FFPTLEE74 pKa = 5.65DD75 pKa = 3.64IDD77 pKa = 4.18FTDD80 pKa = 3.25KK81 pKa = 10.9LVAIFGCGDD90 pKa = 3.25QEE92 pKa = 5.04DD93 pKa = 4.3YY94 pKa = 11.79AEE96 pKa = 4.32YY97 pKa = 10.5FCDD100 pKa = 4.34AMGTVRR106 pKa = 11.84NIIEE110 pKa = 4.05PHH112 pKa = 5.95GATIVGYY119 pKa = 9.34WPTEE123 pKa = 3.87GYY125 pKa = 10.48NFEE128 pKa = 4.12VSQALVDD135 pKa = 3.81EE136 pKa = 4.45NTFVGLCIDD145 pKa = 4.19EE146 pKa = 4.82DD147 pKa = 3.95RR148 pKa = 11.84QPEE151 pKa = 4.37LTSQRR156 pKa = 11.84VEE158 pKa = 3.78TWVKK162 pKa = 9.56QVYY165 pKa = 10.2EE166 pKa = 4.27EE167 pKa = 4.11MCLAEE172 pKa = 5.08LADD175 pKa = 3.75

Molecular weight: 19.84 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2M8S3G7|A0A2M8S3G7_9PAST Phosphate import ATP-binding protein PstB OS=Conservatibacter flavescens OX=28161 GN=pstB PE=3 SV=1
MM1 pKa = 7.45KK2 pKa = 9.51RR3 pKa = 11.84TFQPSVLKK11 pKa = 10.6RR12 pKa = 11.84SRR14 pKa = 11.84THH16 pKa = 6.4GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.4NGRR28 pKa = 11.84QVLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.15GRR39 pKa = 11.84KK40 pKa = 8.87SLSAA44 pKa = 3.86

Molecular weight: 5.1 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2416

0

2416

780385

30

4148

323.0

36.06

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.472 ± 0.056

1.022 ± 0.017

4.954 ± 0.038

6.073 ± 0.051

4.364 ± 0.04

6.786 ± 0.06

2.284 ± 0.025

7.17 ± 0.048

5.749 ± 0.047

10.582 ± 0.066

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.448 ± 0.028

4.739 ± 0.052

3.774 ± 0.032

4.981 ± 0.05

4.363 ± 0.039

5.826 ± 0.04

5.345 ± 0.05

6.601 ± 0.044

1.2 ± 0.018

3.268 ± 0.031
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski