Aurantimonas aggregata

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Hyphomicrobiales; Aurantimonadaceae; Aurantimonas

Average proteome isoelectric point is 6.25

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4495 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A6L9MF89|A0A6L9MF89_9RHIZ Small ribosomal subunit biogenesis GTPase RsgA OS=Aurantimonas aggregata OX=2047720 GN=rsgA PE=3 SV=1
MM1 pKa = 8.04RR2 pKa = 11.84ILTAAAGLALLLGTSLGAAAADD24 pKa = 3.97VYY26 pKa = 11.4APYY29 pKa = 10.31DD30 pKa = 3.95PNPAPPAPAAFDD42 pKa = 3.88YY43 pKa = 11.4GDD45 pKa = 3.47TDD47 pKa = 3.9LVIFLGIGGTVTPQYY62 pKa = 11.16DD63 pKa = 3.46GADD66 pKa = 3.86DD67 pKa = 4.47YY68 pKa = 11.41EE69 pKa = 4.59LSPRR73 pKa = 11.84PIINVEE79 pKa = 3.96YY80 pKa = 10.72LSIPGIGAFGGKK92 pKa = 9.81DD93 pKa = 3.19GLGFSIGPSFGYY105 pKa = 10.24VGEE108 pKa = 4.59RR109 pKa = 11.84DD110 pKa = 3.58ASDD113 pKa = 3.86FDD115 pKa = 4.52GLDD118 pKa = 3.56GLDD121 pKa = 4.89DD122 pKa = 4.06VDD124 pKa = 4.18DD125 pKa = 4.33TYY127 pKa = 11.93EE128 pKa = 4.22LGVRR132 pKa = 11.84AGYY135 pKa = 9.75EE136 pKa = 3.58WDD138 pKa = 3.23HH139 pKa = 8.19AEE141 pKa = 3.52IYY143 pKa = 10.57GAVRR147 pKa = 11.84YY148 pKa = 9.82AFGGADD154 pKa = 3.41GVVGDD159 pKa = 4.77IGANLISRR167 pKa = 11.84PTEE170 pKa = 3.77RR171 pKa = 11.84LVLKK175 pKa = 10.53AGPTASFASSDD186 pKa = 3.6YY187 pKa = 8.55MDD189 pKa = 4.99AYY191 pKa = 10.95FGVTTSEE198 pKa = 4.2SFNTGGRR205 pKa = 11.84LEE207 pKa = 5.02PYY209 pKa = 10.56DD210 pKa = 4.05PDD212 pKa = 4.65GGFKK216 pKa = 10.66SVGVAASARR225 pKa = 11.84YY226 pKa = 8.42EE227 pKa = 4.22VYY229 pKa = 10.42TDD231 pKa = 3.07WFVDD235 pKa = 3.11ADD237 pKa = 3.37ASYY240 pKa = 11.75ARR242 pKa = 11.84LIGDD246 pKa = 4.28AKK248 pKa = 10.77DD249 pKa = 3.69SPIVEE254 pKa = 4.71AGDD257 pKa = 3.81ANQFTFGLGVSKK269 pKa = 10.74RR270 pKa = 11.84FSLDD274 pKa = 2.6LWW276 pKa = 4.14

Molecular weight: 28.97 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A6L9MF82|A0A6L9MF82_9RHIZ Uracil phosphoribosyltransferase OS=Aurantimonas aggregata OX=2047720 GN=upp PE=3 SV=1
MM1 pKa = 7.35KK2 pKa = 9.4RR3 pKa = 11.84TYY5 pKa = 10.2QPSRR9 pKa = 11.84LVRR12 pKa = 11.84KK13 pKa = 8.99RR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.7GFRR19 pKa = 11.84SRR21 pKa = 11.84MATTGGRR28 pKa = 11.84KK29 pKa = 9.29VIAARR34 pKa = 11.84RR35 pKa = 11.84ARR37 pKa = 11.84GRR39 pKa = 11.84KK40 pKa = 9.03RR41 pKa = 11.84LSAA44 pKa = 4.03

Molecular weight: 5.18 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4495

0

4495

1392481

34

6931

309.8

33.43

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.207 ± 0.055

0.779 ± 0.011

5.92 ± 0.038

5.945 ± 0.035

3.763 ± 0.024

8.844 ± 0.039

1.892 ± 0.018

5.146 ± 0.029

2.603 ± 0.025

10.064 ± 0.043

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.45 ± 0.019

2.279 ± 0.022

5.286 ± 0.028

2.843 ± 0.019

7.432 ± 0.045

5.286 ± 0.023

5.323 ± 0.021

7.585 ± 0.031

1.252 ± 0.017

2.1 ± 0.019
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski