Duck associated cyclovirus 1

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cirlivirales; Circoviridae; Cyclovirus

Average proteome isoelectric point is 8.71

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1Y0SVU5|A0A1Y0SVU5_9CIRC ATP-dependent helicase Rep OS=Duck associated cyclovirus 1 OX=2006585 PE=3 SV=1
MM1 pKa = 7.28QRR3 pKa = 11.84KK4 pKa = 9.22CYY6 pKa = 10.43SWTLNNYY13 pKa = 7.18TSEE16 pKa = 4.63DD17 pKa = 3.23IEE19 pKa = 4.63RR20 pKa = 11.84IRR22 pKa = 11.84QHH24 pKa = 5.54EE25 pKa = 4.24HH26 pKa = 6.15LFDD29 pKa = 3.56YY30 pKa = 10.48AIWGRR35 pKa = 11.84EE36 pKa = 3.71IAPEE40 pKa = 3.97TGTPHH45 pKa = 5.63LQGYY49 pKa = 8.07FKK51 pKa = 10.98FKK53 pKa = 9.87TKK55 pKa = 10.12QRR57 pKa = 11.84FNTVRR62 pKa = 11.84AILGGRR68 pKa = 11.84GHH70 pKa = 7.53LEE72 pKa = 3.94GSKK75 pKa = 10.81GSPKK79 pKa = 10.08QNHH82 pKa = 7.04DD83 pKa = 3.66YY84 pKa = 10.37CAKK87 pKa = 10.09SGDD90 pKa = 3.92YY91 pKa = 8.45EE92 pKa = 4.57TVGDD96 pKa = 4.74LVIASQSSLEE106 pKa = 4.6LVCQMLKK113 pKa = 10.9DD114 pKa = 4.14GVRR117 pKa = 11.84LAQVAADD124 pKa = 3.77YY125 pKa = 10.21PSIFVRR131 pKa = 11.84HH132 pKa = 5.38HH133 pKa = 6.08RR134 pKa = 11.84GLRR137 pKa = 11.84EE138 pKa = 3.65LSLILGVVKK147 pKa = 10.38PRR149 pKa = 11.84DD150 pKa = 3.57FKK152 pKa = 9.43TGKK155 pKa = 8.02WAAARR160 pKa = 11.84SIPEE164 pKa = 3.72SLSRR168 pKa = 11.84FRR170 pKa = 11.84ANLLLTVRR178 pKa = 11.84WMILSLLVLVSEE190 pKa = 4.4VLVFYY195 pKa = 10.33GASGTGKK202 pKa = 9.79SRR204 pKa = 11.84RR205 pKa = 11.84AAEE208 pKa = 4.12LCGSEE213 pKa = 3.79STYY216 pKa = 10.88YY217 pKa = 10.48KK218 pKa = 10.5PRR220 pKa = 11.84GKK222 pKa = 9.0WWDD225 pKa = 3.58GYY227 pKa = 11.49ANQDD231 pKa = 3.1NVIIDD236 pKa = 4.57DD237 pKa = 4.55FYY239 pKa = 11.37GWLSFDD245 pKa = 3.4EE246 pKa = 4.63FLRR249 pKa = 11.84IADD252 pKa = 4.55RR253 pKa = 11.84YY254 pKa = 7.36PCRR257 pKa = 11.84VEE259 pKa = 4.22VKK261 pKa = 10.58GGFAEE266 pKa = 4.7FTSKK270 pKa = 10.8RR271 pKa = 11.84IVITSNQAPSQWWRR285 pKa = 11.84GEE287 pKa = 4.01WFKK290 pKa = 11.79GEE292 pKa = 3.85QLKK295 pKa = 11.05ALTRR299 pKa = 11.84RR300 pKa = 11.84LDD302 pKa = 3.54VVCFYY307 pKa = 10.56SAHH310 pKa = 6.41SGLPHH315 pKa = 7.56EE316 pKa = 5.5INCQGDD322 pKa = 3.83CDD324 pKa = 4.29KK325 pKa = 11.23EE326 pKa = 4.08

Molecular weight: 37.34 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1Y0SVU5|A0A1Y0SVU5_9CIRC ATP-dependent helicase Rep OS=Duck associated cyclovirus 1 OX=2006585 PE=3 SV=1
MM1 pKa = 7.59ANYY4 pKa = 9.47RR5 pKa = 11.84RR6 pKa = 11.84KK7 pKa = 9.8KK8 pKa = 10.13KK9 pKa = 9.61YY10 pKa = 8.71GRR12 pKa = 11.84RR13 pKa = 11.84YY14 pKa = 8.67RR15 pKa = 11.84PRR17 pKa = 11.84PLRR20 pKa = 11.84VRR22 pKa = 11.84LYY24 pKa = 8.91NPKK27 pKa = 10.03RR28 pKa = 11.84NRR30 pKa = 11.84LRR32 pKa = 11.84RR33 pKa = 11.84TQRR36 pKa = 11.84RR37 pKa = 11.84LKK39 pKa = 9.22NDD41 pKa = 2.74KK42 pKa = 10.26YY43 pKa = 9.93FTRR46 pKa = 11.84FMSWTSVDD54 pKa = 3.39VDD56 pKa = 3.73PKK58 pKa = 10.62IGQGWYY64 pKa = 9.78LAPNYY69 pKa = 9.84KK70 pKa = 10.41SNPGFLQLAEE80 pKa = 4.24QYY82 pKa = 11.09SEE84 pKa = 4.22FKK86 pKa = 9.2IHH88 pKa = 6.58KK89 pKa = 7.81VAARR93 pKa = 11.84ITPGLNEE100 pKa = 4.33TYY102 pKa = 10.43LAEE105 pKa = 4.05QGLRR109 pKa = 11.84YY110 pKa = 9.65AYY112 pKa = 10.33CPWQQDD118 pKa = 3.44NGGSPSTNDD127 pKa = 2.71IVSNGTDD134 pKa = 3.28LTYY137 pKa = 11.02GKK139 pKa = 10.62LMNVPWAKK147 pKa = 10.12SKK149 pKa = 10.61RR150 pKa = 11.84LHH152 pKa = 5.58QSATIVYY159 pKa = 9.61KK160 pKa = 9.69PKK162 pKa = 10.36CNQAIAFAPRR172 pKa = 11.84TSSGANGNQRR182 pKa = 11.84VISFPWVTTQAMSMGALPGMSGIMLAFDD210 pKa = 3.5QQDD213 pKa = 3.73PLSVIGKK220 pKa = 6.49PLRR223 pKa = 11.84VQVEE227 pKa = 4.05FFLYY231 pKa = 8.66VTFRR235 pKa = 11.84KK236 pKa = 9.59RR237 pKa = 11.84RR238 pKa = 11.84NPMLQTPTPFVMDD251 pKa = 3.16QQ252 pKa = 2.98

Molecular weight: 29.16 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2

0

2

578

252

326

289.0

33.25

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.401 ± 0.033

1.73 ± 0.584

4.498 ± 0.578

4.325 ± 1.46

4.498 ± 0.083

7.439 ± 0.68

1.903 ± 0.692

4.325 ± 0.47

6.228 ± 0.323

8.478 ± 0.585

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.076 ± 0.932

4.152 ± 1.122

5.017 ± 1.573

5.017 ± 0.83

8.651 ± 0.545

6.92 ± 0.604

5.017 ± 0.583

5.882 ± 0.204

2.595 ± 0.381

4.844 ± 0.443
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski