Tetrabaena socialis

Taxonomy: cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; core chlorophytes; Chlorophyceae; CS clade; Chlamydomonadales; Tetrabaenaceae; Tetrabaena

Average proteome isoelectric point is 6.98

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 14121 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2J8A2H0|A0A2J8A2H0_9CHLO Zinc-metallopeptidase peroxisomal (Fragment) OS=Tetrabaena socialis OX=47790 GN=TSOC_006881 PE=4 SV=1
MM1 pKa = 7.52PTPFDD6 pKa = 3.74APAPKK11 pKa = 9.73PATDD15 pKa = 4.03TSCIAAAEE23 pKa = 4.18EE24 pKa = 4.25CGAAEE29 pKa = 4.04TDD31 pKa = 3.54PVVAHH36 pKa = 5.47VPVWASEE43 pKa = 4.02DD44 pKa = 3.72GTVVFADD51 pKa = 3.49AQGNEE56 pKa = 3.86VRR58 pKa = 11.84VGDD61 pKa = 3.9VFGAASEE68 pKa = 4.29LTGFMDD74 pKa = 2.98EE75 pKa = 4.73HH76 pKa = 6.64GAVAYY81 pKa = 9.15YY82 pKa = 10.28VVIRR86 pKa = 11.84QSRR89 pKa = 11.84MVAHH93 pKa = 7.18AAHH96 pKa = 7.12LEE98 pKa = 3.94QLEE101 pKa = 4.38AEE103 pKa = 4.31QHH105 pKa = 5.06QLLLGTSAGVDD116 pKa = 3.08ADD118 pKa = 3.63ADD120 pKa = 3.86AGHH123 pKa = 6.23VVASGGGAEE132 pKa = 6.08DD133 pKa = 4.48EE134 pKa = 5.33DD135 pKa = 6.25LDD137 pKa = 5.54DD138 pKa = 6.53LLALCMGGGGAIPSVVDD155 pKa = 3.18YY156 pKa = 10.94GAATMQYY163 pKa = 9.29TDD165 pKa = 4.4LSAAAILGFEE175 pKa = 5.57DD176 pKa = 4.86MMQLLCVV183 pKa = 3.69

Molecular weight: 18.72 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2J7ZXE9|A0A2J7ZXE9_9CHLO Uncharacterized protein (Fragment) OS=Tetrabaena socialis OX=47790 GN=TSOC_008879 PE=4 SV=1
MM1 pKa = 7.72APRR4 pKa = 11.84RR5 pKa = 11.84LAASRR10 pKa = 11.84RR11 pKa = 11.84SSRR14 pKa = 11.84SSGNSGSSLLLGPRR28 pKa = 11.84SSRR31 pKa = 11.84SRR33 pKa = 11.84SRR35 pKa = 11.84VMRR38 pKa = 11.84RR39 pKa = 11.84QARR42 pKa = 11.84SRR44 pKa = 11.84SSARR48 pKa = 11.84SKK50 pKa = 9.66RR51 pKa = 11.84RR52 pKa = 11.84RR53 pKa = 11.84RR54 pKa = 11.84RR55 pKa = 11.84RR56 pKa = 11.84RR57 pKa = 11.84PQSWPGQHH65 pKa = 6.41PTTSTLAPRR74 pKa = 11.84LTAAQQWRR82 pKa = 11.84TWAWRR87 pKa = 11.84MRR89 pKa = 11.84TQASPRR95 pKa = 11.84QPRR98 pKa = 11.84RR99 pKa = 11.84RR100 pKa = 11.84CPSSKK105 pKa = 9.09IRR107 pKa = 11.84RR108 pKa = 11.84RR109 pKa = 11.84SRR111 pKa = 11.84RR112 pKa = 11.84RR113 pKa = 11.84SS114 pKa = 3.18

Molecular weight: 13.44 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

14121

0

14121

5766222

11

10535

408.3

42.93

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

15.192 ± 0.053

1.738 ± 0.012

4.477 ± 0.017

5.176 ± 0.025

2.396 ± 0.015

10.187 ± 0.038

2.221 ± 0.012

2.378 ± 0.017

2.753 ± 0.022

9.677 ± 0.032

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.979 ± 0.01

2.071 ± 0.015

7.045 ± 0.032

4.399 ± 0.027

6.853 ± 0.024

6.998 ± 0.024

4.611 ± 0.017

6.527 ± 0.019

1.367 ± 0.007

1.951 ± 0.012
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski