Babjeviella inositovora NRRL Y-12698

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Babjeviella; Babjeviella inositovora

Average proteome isoelectric point is 6.53

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6394 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1E3QT99|A0A1E3QT99_9ASCO Uncharacterized protein OS=Babjeviella inositovora NRRL Y-12698 OX=984486 GN=BABINDRAFT_160353 PE=4 SV=1
MM1 pKa = 7.69LSTSEE6 pKa = 4.92AYY8 pKa = 9.66QGYY11 pKa = 10.2KK12 pKa = 10.11LANQVKK18 pKa = 9.91HH19 pKa = 6.22KK20 pKa = 9.17LTRR23 pKa = 11.84TARR26 pKa = 11.84NPNADD31 pKa = 3.46LRR33 pKa = 11.84VLVTQANLLDD43 pKa = 4.19RR44 pKa = 11.84LLDD47 pKa = 3.8SLSSSVCDD55 pKa = 3.77SSSDD59 pKa = 3.75DD60 pKa = 3.88SSDD63 pKa = 3.26SDD65 pKa = 4.07VEE67 pKa = 4.07VDD69 pKa = 3.71VEE71 pKa = 4.28VDD73 pKa = 3.3AGPSVHH79 pKa = 7.09FEE81 pKa = 3.56IPAQRR86 pKa = 11.84EE87 pKa = 3.51QSTTVTCYY95 pKa = 10.29EE96 pKa = 3.83VDD98 pKa = 3.26SDD100 pKa = 5.04GEE102 pKa = 4.09SDD104 pKa = 4.03YY105 pKa = 11.67DD106 pKa = 3.85SQSDD110 pKa = 3.92YY111 pKa = 11.85DD112 pKa = 3.92DD113 pKa = 5.21DD114 pKa = 4.84EE115 pKa = 6.45YY116 pKa = 11.91YY117 pKa = 11.06DD118 pKa = 4.44DD119 pKa = 5.6DD120 pKa = 4.62EE121 pKa = 5.43YY122 pKa = 12.01YY123 pKa = 10.88NDD125 pKa = 5.25SDD127 pKa = 4.43IEE129 pKa = 5.25DD130 pKa = 4.08DD131 pKa = 4.73AGEE134 pKa = 4.42DD135 pKa = 3.78FNKK138 pKa = 10.34GVASFNPYY146 pKa = 8.95TFSHH150 pKa = 6.76HH151 pKa = 6.49ISRR154 pKa = 11.84VLTPVVEE161 pKa = 4.47EE162 pKa = 4.44EE163 pKa = 4.52EE164 pKa = 4.21EE165 pKa = 4.2QEE167 pKa = 3.9PHH169 pKa = 5.52LTYY172 pKa = 11.01SSGTDD177 pKa = 3.37SEE179 pKa = 4.75SDD181 pKa = 3.17SSGHH185 pKa = 5.93HH186 pKa = 6.35NEE188 pKa = 3.36YY189 pKa = 10.2TYY191 pKa = 11.58AKK193 pKa = 10.23DD194 pKa = 3.98RR195 pKa = 11.84STTDD199 pKa = 3.01TTRR202 pKa = 11.84SISANNNVEE211 pKa = 4.15SLMGKK216 pKa = 7.54QLHH219 pKa = 5.71MQSSDD224 pKa = 3.03HH225 pKa = 7.01QMVLLNSLIIEE236 pKa = 5.34GYY238 pKa = 9.99

Molecular weight: 26.64 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1E3QP52|A0A1E3QP52_9ASCO Tubulin-folding cofactor C (Fragment) OS=Babjeviella inositovora NRRL Y-12698 OX=984486 GN=BABINDRAFT_26651 PE=3 SV=1
MM1 pKa = 7.46ARR3 pKa = 11.84RR4 pKa = 11.84YY5 pKa = 9.48SAWKK9 pKa = 10.31RR10 pKa = 11.84LTQVNRR16 pKa = 11.84IVLLCIRR23 pKa = 11.84VTRR26 pKa = 11.84SLLSKK31 pKa = 10.49ASHH34 pKa = 5.76TASTQEE40 pKa = 4.07PKK42 pKa = 10.97GGLNSYY48 pKa = 10.78LKK50 pKa = 10.45GKK52 pKa = 8.19SFRR55 pKa = 11.84IFSCSSYY62 pKa = 10.28WSTHH66 pKa = 3.54LCIRR70 pKa = 11.84RR71 pKa = 11.84RR72 pKa = 11.84EE73 pKa = 4.25DD74 pKa = 3.36IRR76 pKa = 11.84DD77 pKa = 3.04IDD79 pKa = 4.08FKK81 pKa = 11.08VSQGRR86 pKa = 11.84APCFFQNEE94 pKa = 4.5VISAGPTLPQLCCSPRR110 pKa = 11.84LVQQNKK116 pKa = 8.92

Molecular weight: 13.31 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6393

1

6394

2766287

49

5023

432.6

48.27

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.86 ± 0.039

1.231 ± 0.012

5.469 ± 0.023

6.391 ± 0.029

4.347 ± 0.018

5.785 ± 0.028

2.279 ± 0.012

5.394 ± 0.021

5.835 ± 0.028

10.055 ± 0.031

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.168 ± 0.011

4.249 ± 0.019

4.953 ± 0.027

3.798 ± 0.022

4.951 ± 0.024

8.03 ± 0.034

5.963 ± 0.018

6.848 ± 0.026

1.096 ± 0.01

3.298 ± 0.016
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski