Hydrogenovibrio marinus

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Hydrogenovibrio

Average proteome isoelectric point is 6.22

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2330 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A067A105|A0A067A105_HYDMR Pribosyltran domain-containing protein OS=Hydrogenovibrio marinus OX=28885 GN=EI16_08415 PE=4 SV=1
MM1 pKa = 7.04ITNITDD7 pKa = 3.49TNGDD11 pKa = 3.6YY12 pKa = 11.43SNVILHH18 pKa = 5.88GTGEE22 pKa = 4.17PGATVTLLSRR32 pKa = 11.84EE33 pKa = 3.99GSTTGGNDD41 pKa = 3.12TGSWTYY47 pKa = 9.79TAVEE51 pKa = 4.19TSTPIVVDD59 pKa = 4.36ANGNWTVDD67 pKa = 2.99ISNLPNTPIDD77 pKa = 3.84DD78 pKa = 4.09NEE80 pKa = 4.23FFKK83 pKa = 10.62ATQIDD88 pKa = 3.5ASGNVSADD96 pKa = 3.42SDD98 pKa = 4.35SVHH101 pKa = 5.94YY102 pKa = 9.07WHH104 pKa = 7.55GDD106 pKa = 2.85WSSVATEE113 pKa = 4.26ANDD116 pKa = 3.82DD117 pKa = 3.92YY118 pKa = 12.08VMMGSGKK125 pKa = 9.79DD126 pKa = 3.33QIIISSNDD134 pKa = 3.44TNDD137 pKa = 3.11HH138 pKa = 5.69FVVDD142 pKa = 4.32GGDD145 pKa = 3.89NIDD148 pKa = 3.51TAVFSGKK155 pKa = 10.18FSDD158 pKa = 4.35YY159 pKa = 11.43ALSTSSTGSLIVTEE173 pKa = 4.9GVSTDD178 pKa = 3.3SNGNGVGDD186 pKa = 3.62VDD188 pKa = 3.69EE189 pKa = 5.02LRR191 pKa = 11.84NIEE194 pKa = 4.27KK195 pKa = 10.83VKK197 pKa = 9.85FTDD200 pKa = 3.36GTYY203 pKa = 10.64DD204 pKa = 3.18VPTGVFKK211 pKa = 11.43LNGISVDD218 pKa = 3.52IEE220 pKa = 4.43HH221 pKa = 7.33DD222 pKa = 3.55TGTSSTDD229 pKa = 3.23RR230 pKa = 11.84ITNDD234 pKa = 2.56STLKK238 pKa = 9.37VTGLVSGATIEE249 pKa = 4.14YY250 pKa = 10.35SSDD253 pKa = 3.25GGQTWTTQYY262 pKa = 11.28NPQEE266 pKa = 4.2GVNNISVRR274 pKa = 11.84QVDD277 pKa = 4.24AEE279 pKa = 4.25GHH281 pKa = 5.86TSDD284 pKa = 4.25SSNVSFTLDD293 pKa = 3.24TQAGANIDD301 pKa = 3.65VDD303 pKa = 3.6ILTGDD308 pKa = 4.2GYY310 pKa = 10.06LTAAEE315 pKa = 4.58AFPGVKK321 pKa = 10.07VPVTGYY327 pKa = 10.11VQGDD331 pKa = 4.0AQPGDD336 pKa = 4.12TISIILDD343 pKa = 3.38GNVIGTGTVSSDD355 pKa = 3.46VNSSGAYY362 pKa = 7.39TFSVDD367 pKa = 4.35VLGSDD372 pKa = 3.78LADD375 pKa = 3.78GSGMIPEE382 pKa = 5.04LKK384 pKa = 10.02ATVTGSDD391 pKa = 3.29VAGNTFSAEE400 pKa = 3.98STEE403 pKa = 4.79VYY405 pKa = 9.95MKK407 pKa = 10.94DD408 pKa = 4.12FIATVSINVTDD419 pKa = 4.52GNTSDD424 pKa = 3.6SDD426 pKa = 3.95NVISASEE433 pKa = 3.87ASSTVVSGNVEE444 pKa = 3.6VGGQVSSITISDD456 pKa = 3.69GTNTLTIPANQITVYY471 pKa = 10.9SNGYY475 pKa = 7.37YY476 pKa = 9.38TVNTDD481 pKa = 3.29VSSLNDD487 pKa = 3.5GVLTVSVEE495 pKa = 4.21ASDD498 pKa = 3.83KK499 pKa = 11.02LGNVGTNSTTIEE511 pKa = 4.71KK512 pKa = 8.78DD513 pKa = 3.18TQAQAGTVTVDD524 pKa = 4.87SITDD528 pKa = 3.64DD529 pKa = 4.31NIVNTMEE536 pKa = 4.25SGQTIAVTGTATGGDD551 pKa = 3.54ISSGDD556 pKa = 3.94TLTMTINGKK565 pKa = 10.19DD566 pKa = 3.36YY567 pKa = 10.35STTVNSDD574 pKa = 3.51GNWSVDD580 pKa = 3.45VAGSDD585 pKa = 3.97LAADD589 pKa = 3.81ADD591 pKa = 3.97KK592 pKa = 11.56GFTASVASSDD602 pKa = 3.53AAGNTVTSSAAHH614 pKa = 6.71SYY616 pKa = 9.41TVDD619 pKa = 3.58SQPEE623 pKa = 4.24GHH625 pKa = 7.44DD626 pKa = 3.34EE627 pKa = 4.11TQTMDD632 pKa = 3.64FEE634 pKa = 4.84SATVSQKK641 pKa = 6.25TTNVVITLDD650 pKa = 3.3ISGSMDD656 pKa = 3.29SDD658 pKa = 3.7SRR660 pKa = 11.84LALAKK665 pKa = 10.37SALEE669 pKa = 3.96KK670 pKa = 10.34MINAYY675 pKa = 10.28DD676 pKa = 3.54NQGNVNVKK684 pKa = 9.92LVAFNGGATLEE695 pKa = 4.11QHH697 pKa = 7.15DD698 pKa = 4.14GSVWLKK704 pKa = 10.29ADD706 pKa = 3.62EE707 pKa = 5.27AISIIKK713 pKa = 9.71DD714 pKa = 3.49LQAGGSTNYY723 pKa = 10.09EE724 pKa = 3.9DD725 pKa = 5.71AVLKK729 pKa = 10.06TYY731 pKa = 11.2SNYY734 pKa = 10.11SEE736 pKa = 4.02PTADD740 pKa = 2.96KK741 pKa = 9.75TVAYY745 pKa = 8.72FISDD749 pKa = 4.15GEE751 pKa = 4.39PTTEE755 pKa = 3.8NYY757 pKa = 10.22GGNGSGTAGGFLDD770 pKa = 4.36NDD772 pKa = 4.32YY773 pKa = 11.58EE774 pKa = 4.48HH775 pKa = 6.99GWDD778 pKa = 3.62NFVSQYY784 pKa = 11.01VDD786 pKa = 3.54DD787 pKa = 4.41LHH789 pKa = 8.49VVALGDD795 pKa = 3.58DD796 pKa = 4.0ALNSKK801 pKa = 10.15YY802 pKa = 10.86LDD804 pKa = 3.59VLASAGNNVSTVTEE818 pKa = 4.09VSDD821 pKa = 4.5ASQLSDD827 pKa = 5.12AIVPTNTEE835 pKa = 3.84LSVTGTVSDD844 pKa = 4.09NVTGGDD850 pKa = 3.72GAITIQSITVDD861 pKa = 3.34GTAYY865 pKa = 9.67TSSTFPSEE873 pKa = 3.72GVAINGKK880 pKa = 8.33GTLAFDD886 pKa = 4.76FSTGNYY892 pKa = 7.53TYY894 pKa = 10.93SAGSNEE900 pKa = 3.81FTKK903 pKa = 10.74DD904 pKa = 3.19VTQMFTVTAADD915 pKa = 3.83ADD917 pKa = 4.15GDD919 pKa = 4.1TADD922 pKa = 3.74VKK924 pKa = 11.29VSINVNVDD932 pKa = 3.24DD933 pKa = 4.25TASNATLSMSIGDD946 pKa = 4.06AEE948 pKa = 4.49VTTTHH953 pKa = 6.74NYY955 pKa = 9.96TYY957 pKa = 11.02DD958 pKa = 3.42SDD960 pKa = 3.97DD961 pKa = 3.63ARR963 pKa = 11.84NANHH967 pKa = 7.26DD968 pKa = 4.21NYY970 pKa = 10.99HH971 pKa = 6.11SLHH974 pKa = 7.03DD975 pKa = 4.43ALEE978 pKa = 4.48GQNGCNHH985 pKa = 6.29SNGTLVYY992 pKa = 10.42KK993 pKa = 10.57NVNEE997 pKa = 4.33TSWNLSDD1004 pKa = 5.79SSDD1007 pKa = 3.36KK1008 pKa = 11.24LFAITGNSHH1017 pKa = 6.06NANINLSGGNNTLIFEE1033 pKa = 5.01KK1034 pKa = 10.89DD1035 pKa = 3.23PGSNIAVNFGSGKK1048 pKa = 10.25DD1049 pKa = 3.63VLILPGSEE1057 pKa = 3.58SDD1059 pKa = 3.86YY1060 pKa = 11.18NLSAFHH1066 pKa = 6.79NNGGVLSGQITGHH1079 pKa = 6.94DD1080 pKa = 3.63NMNLTVNNLDD1090 pKa = 3.84CLVFSDD1096 pKa = 4.64QVMGDD1101 pKa = 3.06SSLYY1105 pKa = 10.38KK1106 pKa = 10.82GEE1108 pKa = 4.17TSNHH1112 pKa = 3.83YY1113 pKa = 9.61TYY1115 pKa = 11.16DD1116 pKa = 3.73LSASASLTDD1125 pKa = 3.53TDD1127 pKa = 4.29GSEE1130 pKa = 4.18SLSDD1134 pKa = 3.28ITISGLPDD1142 pKa = 4.5DD1143 pKa = 5.35GSVTVTGTDD1152 pKa = 3.04VSKK1155 pKa = 11.49NDD1157 pKa = 3.51DD1158 pKa = 2.97GTYY1161 pKa = 10.3NVKK1164 pKa = 10.46LQDD1167 pKa = 4.01DD1168 pKa = 4.44GKK1170 pKa = 10.71IADD1173 pKa = 4.23DD1174 pKa = 3.97VKK1176 pKa = 10.72ISSSKK1181 pKa = 10.54EE1182 pKa = 3.82LTSSEE1187 pKa = 4.36LNDD1190 pKa = 3.01VHH1192 pKa = 8.98ASVTSTEE1199 pKa = 4.41SNGNEE1204 pKa = 3.96TATTEE1209 pKa = 4.21VNEE1212 pKa = 4.4SGDD1215 pKa = 3.49NFLYY1219 pKa = 10.86ADD1221 pKa = 3.84TGDD1224 pKa = 4.08DD1225 pKa = 4.12LFVGTNQSDD1234 pKa = 4.12TIKK1237 pKa = 10.66VDD1239 pKa = 3.33GDD1241 pKa = 3.62GSTTVQNFDD1250 pKa = 3.37VQNDD1254 pKa = 3.64VLDD1257 pKa = 4.52LSDD1260 pKa = 5.48VIADD1264 pKa = 4.01DD1265 pKa = 4.21QVVTQDD1271 pKa = 3.62TLSQYY1276 pKa = 9.97LTVTQTDD1283 pKa = 3.14KK1284 pKa = 10.71GTEE1287 pKa = 3.96VTVDD1291 pKa = 3.47SNGKK1295 pKa = 9.26DD1296 pKa = 3.38VAGGEE1301 pKa = 4.37VANIMLEE1308 pKa = 3.91GLNDD1312 pKa = 3.98SNNLQIQIDD1321 pKa = 4.07DD1322 pKa = 3.99NKK1324 pKa = 10.44VDD1326 pKa = 3.52YY1327 pKa = 11.12HH1328 pKa = 6.78DD1329 pKa = 3.94

Molecular weight: 138.52 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A066ZQP2|A0A066ZQP2_HYDMR Rhodanese domain-containing protein OS=Hydrogenovibrio marinus OX=28885 GN=EI16_05825 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.51RR3 pKa = 11.84TFQPSVIKK11 pKa = 10.49RR12 pKa = 11.84ARR14 pKa = 11.84THH16 pKa = 5.92GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.37NGRR28 pKa = 11.84KK29 pKa = 9.16VLAARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.76GRR39 pKa = 11.84KK40 pKa = 8.98RR41 pKa = 11.84LTVV44 pKa = 3.11

Molecular weight: 5.11 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2330

0

2330

736326

41

2103

316.0

35.27

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.278 ± 0.051

0.834 ± 0.018

5.602 ± 0.043

6.541 ± 0.052

4.254 ± 0.037

6.563 ± 0.047

2.302 ± 0.024

6.383 ± 0.04

6.133 ± 0.045

10.199 ± 0.051

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.853 ± 0.026

4.237 ± 0.032

3.974 ± 0.029

4.681 ± 0.045

4.237 ± 0.037

6.416 ± 0.041

5.246 ± 0.039

6.994 ± 0.048

1.229 ± 0.023

3.044 ± 0.031
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski