Bathycoccus prasinos

Taxonomy: cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus

Average proteome isoelectric point is 6.57

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7886 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|K8EBG6|K8EBG6_9CHLO Uncharacterized protein OS=Bathycoccus prasinos OX=41875 GN=Bathy02g00280 PE=4 SV=1
MM1 pKa = 7.44NEE3 pKa = 3.27VALWVGAACLFGAGIGFVQGVDD25 pKa = 3.0KK26 pKa = 11.03ASEE29 pKa = 4.17YY30 pKa = 10.29FAGYY34 pKa = 10.27LLEE37 pKa = 4.3QSLSVDD43 pKa = 3.17NLFVFILVFDD53 pKa = 3.94YY54 pKa = 10.82FKK56 pKa = 11.11VPEE59 pKa = 4.19STQPKK64 pKa = 7.79VLSYY68 pKa = 10.85GIVGAMIMRR77 pKa = 11.84AAMILAGATAIEE89 pKa = 4.54DD90 pKa = 4.02FEE92 pKa = 4.52PVLLVFAGILIFSSYY107 pKa = 10.92KK108 pKa = 10.35LLANNEE114 pKa = 4.07EE115 pKa = 4.33EE116 pKa = 4.36EE117 pKa = 4.39EE118 pKa = 4.13EE119 pKa = 4.16DD120 pKa = 4.23LKK122 pKa = 11.58DD123 pKa = 3.41SAIVKK128 pKa = 8.96FCSSMIQVSDD138 pKa = 4.37EE139 pKa = 4.02YY140 pKa = 11.42DD141 pKa = 3.37GDD143 pKa = 4.25NFWTTAKK150 pKa = 10.84DD151 pKa = 3.84GVTKK155 pKa = 10.23MATPLLLVVAVIEE168 pKa = 4.19LSDD171 pKa = 3.51VVFAVDD177 pKa = 4.69SIPAVFGVTKK187 pKa = 10.57DD188 pKa = 3.31PFIVYY193 pKa = 8.66TSNIFAICGLRR204 pKa = 11.84SLFGFVSAVVSEE216 pKa = 4.27LEE218 pKa = 3.9YY219 pKa = 11.25LEE221 pKa = 4.42TSVAVVLGFIGVKK234 pKa = 9.27MVADD238 pKa = 3.63YY239 pKa = 11.28AGYY242 pKa = 9.91PMSTEE247 pKa = 3.51ASLAVVATLLSGGVAASYY265 pKa = 9.33LFPSAPAEE273 pKa = 4.25VTSSVDD279 pKa = 3.23EE280 pKa = 4.27

Molecular weight: 29.91 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|K8EWZ9|K8EWZ9_9CHLO Uncharacterized protein OS=Bathycoccus prasinos OX=41875 GN=Bathy06g04680 PE=4 SV=1
MM1 pKa = 7.1RR2 pKa = 11.84AKK4 pKa = 9.24WKK6 pKa = 10.27KK7 pKa = 9.75KK8 pKa = 6.4RR9 pKa = 11.84TRR11 pKa = 11.84RR12 pKa = 11.84LKK14 pKa = 9.73RR15 pKa = 11.84KK16 pKa = 7.81RR17 pKa = 11.84RR18 pKa = 11.84KK19 pKa = 8.8MRR21 pKa = 11.84MRR23 pKa = 11.84SKK25 pKa = 11.07

Molecular weight: 3.4 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7886

0

7886

4117150

25

16310

522.1

58.15

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.217 ± 0.031

1.59 ± 0.013

6.052 ± 0.024

8.439 ± 0.042

4.024 ± 0.02

6.459 ± 0.026

1.871 ± 0.013

4.217 ± 0.018

7.329 ± 0.039

7.839 ± 0.036

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.356 ± 0.015

4.661 ± 0.019

3.806 ± 0.019

3.167 ± 0.019

6.133 ± 0.033

8.206 ± 0.045

5.718 ± 0.03

6.359 ± 0.023

1.068 ± 0.013

2.346 ± 0.017
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski