Actinidia virus 1

Taxonomy: Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Closteroviridae

Average proteome isoelectric point is 6.97

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 12 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A223A477|A0A223A477_9CLOS Leader protease OS=Actinidia virus 1 OX=2024724 PE=4 SV=1
MM1 pKa = 8.4DD2 pKa = 5.15EE3 pKa = 4.33LLQVAFSMLFLLGFCLLLCTCLVGSFSVYY32 pKa = 10.67KK33 pKa = 10.51KK34 pKa = 11.0VSDD37 pKa = 3.95PDD39 pKa = 3.49AATEE43 pKa = 4.22NISRR47 pKa = 11.84VGRR50 pKa = 11.84LL51 pKa = 3.07

Molecular weight: 5.62 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A223A3K8|A0A223A3K8_9CLOS Uncharacterized protein OS=Actinidia virus 1 OX=2024724 PE=4 SV=1
MM1 pKa = 7.35GALFTVYY8 pKa = 10.0EE9 pKa = 4.38SEE11 pKa = 4.23RR12 pKa = 11.84HH13 pKa = 3.91VAYY16 pKa = 10.42DD17 pKa = 3.04NRR19 pKa = 11.84DD20 pKa = 3.31RR21 pKa = 11.84HH22 pKa = 5.9PSWGSSCHH30 pKa = 6.36YY31 pKa = 8.87DD32 pKa = 2.99TYY34 pKa = 11.73YY35 pKa = 11.26NNCGSGGPYY44 pKa = 10.12GRR46 pKa = 11.84STDD49 pKa = 3.88SLISYY54 pKa = 9.79YY55 pKa = 10.71NFSEE59 pKa = 4.3MQQHH63 pKa = 5.92LMRR66 pKa = 11.84RR67 pKa = 11.84EE68 pKa = 4.17RR69 pKa = 11.84ILSEE73 pKa = 3.74NLIEE77 pKa = 5.08RR78 pKa = 11.84DD79 pKa = 3.4KK80 pKa = 11.59LYY82 pKa = 10.86DD83 pKa = 3.3AEE85 pKa = 3.98IRR87 pKa = 11.84KK88 pKa = 10.0RR89 pKa = 11.84NEE91 pKa = 3.53CYY93 pKa = 10.25AKK95 pKa = 10.07HH96 pKa = 6.11KK97 pKa = 10.16RR98 pKa = 11.84RR99 pKa = 11.84SRR101 pKa = 11.84KK102 pKa = 9.46RR103 pKa = 11.84FSLYY107 pKa = 10.63SLLYY111 pKa = 9.88RR112 pKa = 4.76

Molecular weight: 13.57 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

12

0

12

6042

51

3185

503.5

56.83

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.991 ± 0.714

2.234 ± 0.222

5.793 ± 0.612

4.651 ± 0.566

4.187 ± 0.443

5.627 ± 0.606

1.953 ± 0.273

6.256 ± 0.786

5.826 ± 0.411

9.335 ± 0.775

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.383 ± 0.264

4.982 ± 0.447

3.956 ± 0.564

2.052 ± 0.122

6.521 ± 0.736

8.739 ± 0.524

5.412 ± 0.423

8.342 ± 0.795

0.927 ± 0.11

4.833 ± 0.656
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski