Panacagrimonas perspica

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Nevskiales; Sinobacteraceae; Panacagrimonas

Average proteome isoelectric point is 6.72

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4772 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4R7NXK3|A0A4R7NXK3_9GAMM Uncharacterized protein OS=Panacagrimonas perspica OX=381431 GN=DFR24_4352 PE=4 SV=1
MM1 pKa = 7.13KK2 pKa = 10.18RR3 pKa = 11.84EE4 pKa = 4.51LIAAIAACGFAAPALAATGNNYY26 pKa = 9.7VDD28 pKa = 3.89GYY30 pKa = 10.99FYY32 pKa = 11.09LSDD35 pKa = 3.76IDD37 pKa = 4.86VGPADD42 pKa = 4.57DD43 pKa = 5.49DD44 pKa = 4.45GVGVGVKK51 pKa = 10.38GGFQVADD58 pKa = 3.38QVYY61 pKa = 7.95LTGEE65 pKa = 4.28YY66 pKa = 7.98QTVEE70 pKa = 3.86YY71 pKa = 11.02DD72 pKa = 4.08DD73 pKa = 5.55FNVDD77 pKa = 4.0LDD79 pKa = 3.8QLRR82 pKa = 11.84LGAGFGPGMGTKK94 pKa = 10.36GQGLYY99 pKa = 10.82GRR101 pKa = 11.84AEE103 pKa = 4.06YY104 pKa = 11.12VKK106 pKa = 10.68FDD108 pKa = 4.2IDD110 pKa = 4.21SEE112 pKa = 4.34DD113 pKa = 3.49DD114 pKa = 3.54SGIGGHH120 pKa = 6.08VGYY123 pKa = 10.61ALPLSDD129 pKa = 3.44QFRR132 pKa = 11.84LHH134 pKa = 6.99GEE136 pKa = 3.91VGYY139 pKa = 11.02LLLDD143 pKa = 4.46DD144 pKa = 4.83SDD146 pKa = 4.61GPEE149 pKa = 3.84LAIGGTYY156 pKa = 9.73RR157 pKa = 11.84VAQNFGIFADD167 pKa = 4.09YY168 pKa = 10.22RR169 pKa = 11.84ASFLDD174 pKa = 3.97GDD176 pKa = 4.18HH177 pKa = 6.99GGDD180 pKa = 4.69LDD182 pKa = 4.96ISDD185 pKa = 4.56LRR187 pKa = 11.84IGARR191 pKa = 11.84FYY193 pKa = 11.22FF194 pKa = 4.26

Molecular weight: 20.7 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4R7P0E0|A0A4R7P0E0_9GAMM Uncharacterized protein OS=Panacagrimonas perspica OX=381431 GN=DFR24_3742 PE=4 SV=1
MM1 pKa = 7.43LVLFALGICIGLTLGLTGAGGSIIAVPILMFGMGWTVAQAGPVALLAVASSAAVGAMIGLRR62 pKa = 11.84QRR64 pKa = 11.84QVRR67 pKa = 11.84YY68 pKa = 9.26RR69 pKa = 11.84AAILVASCGVVVSPAGLMTAKK90 pKa = 10.31HH91 pKa = 5.93IPPHH95 pKa = 6.22LLTVAFAALLAWASFTALKK114 pKa = 10.23KK115 pKa = 10.61SRR117 pKa = 11.84GSSHH121 pKa = 6.67VGVSEE126 pKa = 4.36SVGGDD131 pKa = 3.25GASCLRR137 pKa = 11.84DD138 pKa = 3.0AATGRR143 pKa = 11.84FCWTRR148 pKa = 11.84SCGQALAITGVGAGFLSGLFGVGGGFFIVPALRR181 pKa = 11.84RR182 pKa = 11.84ITDD185 pKa = 3.76LSMNAVIATSMLIIALVSSGAAISAALAGRR215 pKa = 11.84LPLDD219 pKa = 3.33VGLPFAFGAVCGMAGGRR236 pKa = 11.84MVSGKK241 pKa = 10.25VDD243 pKa = 3.49GVLLARR249 pKa = 11.84GFSALCGVIAVLLVARR265 pKa = 11.84EE266 pKa = 4.03IYY268 pKa = 10.07AWRR271 pKa = 4.39

Molecular weight: 27.17 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4772

0

4772

1604628

29

2717

336.3

36.69

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.995 ± 0.048

0.97 ± 0.012

5.654 ± 0.023

5.641 ± 0.03

3.654 ± 0.024

8.373 ± 0.032

2.19 ± 0.018

4.49 ± 0.024

3.343 ± 0.032

10.424 ± 0.04

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.336 ± 0.017

2.565 ± 0.023

5.341 ± 0.026

3.442 ± 0.021

7.531 ± 0.039

5.622 ± 0.023

5.131 ± 0.027

7.496 ± 0.03

1.474 ± 0.016

2.326 ± 0.018
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski