Halomonas ilicicola DSM 19980

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas; Halomonas ilicicola

Average proteome isoelectric point is 6.16

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3660 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1M5BC90|A0A1M5BC90_9GAMM Ubiquinone biosynthesis protein OS=Halomonas ilicicola DSM 19980 OX=1121942 GN=SAMN02745148_02510 PE=4 SV=1
MM1 pKa = 7.32RR2 pKa = 11.84TLHH5 pKa = 5.84TFMLAGALTALALPAAAASGHH26 pKa = 5.15WSVGAEE32 pKa = 4.01VGTTGYY38 pKa = 10.52GGSLSYY44 pKa = 10.56RR45 pKa = 11.84FHH47 pKa = 8.08DD48 pKa = 4.19NLALTAGYY56 pKa = 10.58SGFTYY61 pKa = 10.89DD62 pKa = 4.94DD63 pKa = 3.63IEE65 pKa = 4.83YY66 pKa = 8.19EE67 pKa = 4.18TDD69 pKa = 3.32DD70 pKa = 4.07ADD72 pKa = 3.87YY73 pKa = 11.47DD74 pKa = 4.18GDD76 pKa = 3.52VDD78 pKa = 3.66MDD80 pKa = 4.26VYY82 pKa = 11.41GLTLDD87 pKa = 3.64YY88 pKa = 10.93FPFGGRR94 pKa = 11.84FFLSAGAVKK103 pKa = 10.07PDD105 pKa = 3.1IAALVIGRR113 pKa = 11.84PKK115 pKa = 10.64DD116 pKa = 3.7GQSYY120 pKa = 9.34EE121 pKa = 4.38YY122 pKa = 11.04NGNTYY127 pKa = 7.95TAEE130 pKa = 4.04EE131 pKa = 4.46VGTLRR136 pKa = 11.84GDD138 pKa = 3.37VTLGDD143 pKa = 4.39SIQPYY148 pKa = 10.42LGLGWRR154 pKa = 11.84GSHH157 pKa = 6.73KK158 pKa = 10.74SGLGVFAKK166 pKa = 10.63LGAFLTDD173 pKa = 3.21AEE175 pKa = 4.78VNLEE179 pKa = 4.02ASGAASDD186 pKa = 3.7PQLRR190 pKa = 11.84EE191 pKa = 4.71DD192 pKa = 3.61IQQEE196 pKa = 4.03EE197 pKa = 5.37DD198 pKa = 3.93DD199 pKa = 4.67LQDD202 pKa = 4.11DD203 pKa = 3.68VDD205 pKa = 3.9EE206 pKa = 5.23FGVYY210 pKa = 9.34PVAVLGLEE218 pKa = 4.23YY219 pKa = 10.68TFF221 pKa = 5.29

Molecular weight: 23.66 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1M4VVQ6|A0A1M4VVQ6_9GAMM Iron-sulfur cluster insertion protein ErpA OS=Halomonas ilicicola DSM 19980 OX=1121942 GN=erpA PE=3 SV=1
MM1 pKa = 7.45KK2 pKa = 9.51RR3 pKa = 11.84TFQPSVLKK11 pKa = 10.34RR12 pKa = 11.84KK13 pKa = 9.1RR14 pKa = 11.84VHH16 pKa = 6.26GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.4NGRR28 pKa = 11.84QVLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.93GRR39 pKa = 11.84KK40 pKa = 8.85RR41 pKa = 11.84LSAA44 pKa = 3.96

Molecular weight: 5.21 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3660

0

3660

1184749

39

5047

323.7

35.61

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.945 ± 0.051

0.918 ± 0.016

5.82 ± 0.039

6.585 ± 0.047

3.506 ± 0.026

8.234 ± 0.045

2.407 ± 0.026

4.819 ± 0.031

2.738 ± 0.029

11.535 ± 0.068

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.46 ± 0.02

2.562 ± 0.028

4.883 ± 0.029

3.804 ± 0.028

7.433 ± 0.053

5.391 ± 0.031

4.97 ± 0.031

7.082 ± 0.033

1.502 ± 0.021

2.409 ± 0.022
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski