Rusa timorensis papillomavirus type 1

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Treisthetapapillomavirus; Treisthetapapillomavirus 1

Average proteome isoelectric point is 6.27

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A109PMF8|A0A109PMF8_9PAPI Major capsid protein L1 OS=Rusa timorensis papillomavirus type 1 OX=1776868 GN=L1 PE=3 SV=1
MM1 pKa = 7.0CAEE4 pKa = 4.76MIGEE8 pKa = 4.3SATIQDD14 pKa = 5.31IILQDD19 pKa = 3.29IDD21 pKa = 5.16SIDD24 pKa = 3.95LACHH28 pKa = 5.32EE29 pKa = 4.52TLSSEE34 pKa = 4.29VEE36 pKa = 3.79QRR38 pKa = 11.84RR39 pKa = 11.84PTVYY43 pKa = 9.56PYY45 pKa = 10.79KK46 pKa = 10.37IVTRR50 pKa = 11.84CGQCEE55 pKa = 3.92TSICLYY61 pKa = 10.65VGSTQIGIVTLQSQLAEE78 pKa = 4.55DD79 pKa = 4.2LCILCGNCGRR89 pKa = 11.84QNFPNGRR96 pKa = 11.84KK97 pKa = 9.56KK98 pKa = 10.74SS99 pKa = 3.63

Molecular weight: 10.92 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0X9K182|A0A0X9K182_9PAPI Replication protein E1 OS=Rusa timorensis papillomavirus type 1 OX=1776868 GN=E1 PE=3 SV=1
MM1 pKa = 7.35ATLNDD6 pKa = 4.23RR7 pKa = 11.84FDD9 pKa = 4.89ALQQSQLDD17 pKa = 3.99IIEE20 pKa = 4.91AEE22 pKa = 4.3PGTLEE27 pKa = 4.66DD28 pKa = 5.55QIFYY32 pKa = 10.43WDD34 pKa = 4.17LLRR37 pKa = 11.84QEE39 pKa = 5.61RR40 pKa = 11.84VLQYY44 pKa = 8.74YY45 pKa = 9.91ARR47 pKa = 11.84KK48 pKa = 9.7KK49 pKa = 9.21GYY51 pKa = 9.52KK52 pKa = 9.19RR53 pKa = 11.84LGMLPLPTLQISEE66 pKa = 4.38AAAKK70 pKa = 9.59EE71 pKa = 4.11AIAMTLHH78 pKa = 6.63LSSLKK83 pKa = 10.14EE84 pKa = 3.56SSYY87 pKa = 11.89ANEE90 pKa = 3.76RR91 pKa = 11.84WTLQDD96 pKa = 3.11TSIVTFEE103 pKa = 4.78SPPQFTFKK111 pKa = 10.48KK112 pKa = 10.13GPVAVKK118 pKa = 10.32LSFDD122 pKa = 4.07GNPDD126 pKa = 3.01NAVRR130 pKa = 11.84HH131 pKa = 5.02TLWRR135 pKa = 11.84DD136 pKa = 2.74IYY138 pKa = 11.54YY139 pKa = 10.49LDD141 pKa = 6.46DD142 pKa = 5.24DD143 pKa = 4.42DD144 pKa = 4.39QWRR147 pKa = 11.84KK148 pKa = 7.82TYY150 pKa = 11.18SDD152 pKa = 3.12VDD154 pKa = 3.64SRR156 pKa = 11.84GIYY159 pKa = 8.97YY160 pKa = 10.06WSGDD164 pKa = 3.44SKK166 pKa = 11.34VYY168 pKa = 10.4YY169 pKa = 10.8VEE171 pKa = 4.85FKK173 pKa = 11.03DD174 pKa = 4.63DD175 pKa = 3.51ASLYY179 pKa = 10.44SLTGQWEE186 pKa = 3.99VTYY189 pKa = 10.85NKK191 pKa = 8.97KK192 pKa = 8.31TFSSSIATSSTNEE205 pKa = 3.51EE206 pKa = 4.64DD207 pKa = 3.98GPVPISSDD215 pKa = 3.49EE216 pKa = 4.15EE217 pKa = 4.4GTDD220 pKa = 3.36GHH222 pKa = 5.72GQEE225 pKa = 5.4HH226 pKa = 6.26EE227 pKa = 4.14RR228 pKa = 11.84SPNRR232 pKa = 11.84SDD234 pKa = 3.41TEE236 pKa = 4.06EE237 pKa = 5.25GEE239 pKa = 4.4EE240 pKa = 4.16TGGEE244 pKa = 3.94ASEE247 pKa = 4.45KK248 pKa = 10.61ASISGSVRR256 pKa = 11.84SIRR259 pKa = 11.84TARR262 pKa = 11.84SPKK265 pKa = 9.21AHH267 pKa = 6.6SNPRR271 pKa = 11.84SKK273 pKa = 10.68SRR275 pKa = 11.84SRR277 pKa = 11.84SRR279 pKa = 11.84SRR281 pKa = 11.84SRR283 pKa = 11.84SSTRR287 pKa = 11.84GWTRR291 pKa = 11.84ARR293 pKa = 11.84QTSSSGSRR301 pKa = 11.84SRR303 pKa = 11.84SRR305 pKa = 11.84SGSRR309 pKa = 11.84TRR311 pKa = 11.84ARR313 pKa = 11.84SWRR316 pKa = 11.84RR317 pKa = 11.84SPGHH321 pKa = 6.57RR322 pKa = 11.84GRR324 pKa = 11.84GRR326 pKa = 11.84GRR328 pKa = 11.84PPGSGRR334 pKa = 11.84RR335 pKa = 11.84QGGAGSRR342 pKa = 11.84PGAGSGAGGRR352 pKa = 11.84PGLRR356 pKa = 11.84SRR358 pKa = 11.84SRR360 pKa = 11.84DD361 pKa = 3.11TRR363 pKa = 11.84AGSGLPNRR371 pKa = 11.84PSASPRR377 pKa = 11.84AEE379 pKa = 3.53PVRR382 pKa = 11.84VLEE385 pKa = 4.16GSIPRR390 pKa = 11.84PSSYY394 pKa = 11.14GLRR397 pKa = 11.84GSGGEE402 pKa = 4.3TEE404 pKa = 5.14APTDD408 pKa = 3.57TSSLVSPPHH417 pKa = 6.06LSPWFRR423 pKa = 11.84DD424 pKa = 3.72PPRR427 pKa = 11.84APGRR431 pKa = 11.84PPSGRR436 pKa = 11.84HH437 pKa = 5.01RR438 pKa = 11.84RR439 pKa = 11.84PAPTPEE445 pKa = 3.85RR446 pKa = 11.84RR447 pKa = 11.84TTSPLARR454 pKa = 11.84RR455 pKa = 11.84KK456 pKa = 8.82RR457 pKa = 11.84TGSRR461 pKa = 11.84STEE464 pKa = 4.01RR465 pKa = 11.84LHH467 pKa = 6.37STPTSAKK474 pKa = 9.25KK475 pKa = 10.17DD476 pKa = 3.44PPVIIVRR483 pKa = 11.84GLPNQLKK490 pKa = 6.72TWRR493 pKa = 11.84YY494 pKa = 8.18RR495 pKa = 11.84LHH497 pKa = 6.3NRR499 pKa = 11.84RR500 pKa = 11.84KK501 pKa = 9.76KK502 pKa = 10.96LPFLYY507 pKa = 10.7LSTTFSWVTRR517 pKa = 11.84KK518 pKa = 10.63GGDD521 pKa = 3.22RR522 pKa = 11.84LSSTRR527 pKa = 11.84MLVAFASYY535 pKa = 10.95SDD537 pKa = 3.06RR538 pKa = 11.84SYY540 pKa = 11.45FLRR543 pKa = 11.84HH544 pKa = 4.92VVFPPGVTFSLGYY557 pKa = 10.24FYY559 pKa = 11.49GLL561 pKa = 3.62

Molecular weight: 62.71 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

2437

99

585

406.2

45.59

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.032 ± 0.783

2.134 ± 0.933

6.483 ± 0.425

5.868 ± 0.381

4.637 ± 0.603

7.591 ± 0.783

2.093 ± 0.255

4.432 ± 0.83

4.76 ± 0.974

7.92 ± 0.597

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.395 ± 0.21

3.57 ± 0.427

6.319 ± 0.637

3.816 ± 0.391

7.427 ± 1.33

8.33 ± 1.421

6.155 ± 0.558

5.909 ± 0.595

1.477 ± 0.314

3.652 ± 0.34
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski