Haloechinothrix alba

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Pseudonocardiales; Pseudonocardiaceae; Haloechinothrix

Average proteome isoelectric point is 5.96

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4481 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A238WMW8|A0A238WMW8_9PSEU Uncharacterized protein OS=Haloechinothrix alba OX=664784 GN=SAMN06265360_1076 PE=4 SV=1
MM1 pKa = 7.55RR2 pKa = 11.84LVSRR6 pKa = 11.84RR7 pKa = 11.84VVAVLASGALATFAFAAPASASGYY31 pKa = 9.88GADD34 pKa = 4.4DD35 pKa = 4.14AGGAAINIVADD46 pKa = 4.05TVSAAQEE53 pKa = 4.27VTGSWSAEE61 pKa = 3.64RR62 pKa = 11.84MRR64 pKa = 11.84QAVPMEE70 pKa = 3.97QLVSEE75 pKa = 4.48SGDD78 pKa = 3.54VISLGEE84 pKa = 4.18VVGSLTGGDD93 pKa = 3.83PVSIPATKK101 pKa = 10.44RR102 pKa = 11.84LDD104 pKa = 3.68LGSGLGGVLGSASGEE119 pKa = 4.0PWTGGGEE126 pKa = 4.31VASTAGRR133 pKa = 11.84VFFTVDD139 pKa = 3.35GQDD142 pKa = 3.43ASCSGNAVTSEE153 pKa = 4.05NNSTVITAGHH163 pKa = 5.94CVRR166 pKa = 11.84MGGEE170 pKa = 3.71WHH172 pKa = 7.42DD173 pKa = 3.81DD174 pKa = 3.01WVFVPGYY181 pKa = 10.59DD182 pKa = 4.9NGDD185 pKa = 3.3APYY188 pKa = 10.78GEE190 pKa = 4.75WPAEE194 pKa = 3.97TTMATQEE201 pKa = 4.12WVEE204 pKa = 4.38SEE206 pKa = 4.56DD207 pKa = 3.23INYY210 pKa = 10.33DD211 pKa = 2.93VGAAVVHH218 pKa = 5.74EE219 pKa = 4.3QDD221 pKa = 3.62GQSLTEE227 pKa = 3.95VVGGQGIAFNQEE239 pKa = 3.58RR240 pKa = 11.84GQPMYY245 pKa = 11.27SFGYY249 pKa = 8.94PAASPYY255 pKa = 10.71DD256 pKa = 3.78GSEE259 pKa = 4.75LIHH262 pKa = 6.85CSGDD266 pKa = 3.53TFDD269 pKa = 6.19DD270 pKa = 4.16PLFSDD275 pKa = 5.21AMGMDD280 pKa = 4.41CDD282 pKa = 3.9MTGGSSGGPWFLDD295 pKa = 3.29FDD297 pKa = 4.27EE298 pKa = 4.79QSGTGLQSSVNSFGYY313 pKa = 10.87AFLPGTMFGPYY324 pKa = 9.89FGDD327 pKa = 3.57EE328 pKa = 3.94AQEE331 pKa = 4.22VYY333 pKa = 10.69EE334 pKa = 4.3RR335 pKa = 11.84ASTFF339 pKa = 3.1

Molecular weight: 35.12 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A239AWC3|A0A239AWC3_9PSEU Integrase core domain-containing protein (Fragment) OS=Haloechinothrix alba OX=664784 GN=SAMN06265360_1614 PE=4 SV=1
MM1 pKa = 7.85RR2 pKa = 11.84FARR5 pKa = 11.84PKK7 pKa = 10.63AGVALGRR14 pKa = 11.84GLGALGRR21 pKa = 11.84WVRR24 pKa = 11.84RR25 pKa = 11.84VRR27 pKa = 11.84LPRR30 pKa = 11.84VRR32 pKa = 11.84VGVLWGWLRR41 pKa = 11.84RR42 pKa = 11.84VRR44 pKa = 11.84VSGRR48 pKa = 11.84GLAAVAA54 pKa = 4.27

Molecular weight: 5.99 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4481

0

4481

1395595

25

2307

311.4

33.49

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.665 ± 0.052

0.847 ± 0.01

6.395 ± 0.029

6.569 ± 0.035

2.697 ± 0.02

9.335 ± 0.033

2.407 ± 0.017

3.519 ± 0.022

1.784 ± 0.024

9.821 ± 0.043

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.888 ± 0.016

1.867 ± 0.016

5.544 ± 0.031

2.873 ± 0.021

8.064 ± 0.033

5.545 ± 0.024

5.972 ± 0.023

8.743 ± 0.034

1.407 ± 0.016

2.058 ± 0.018
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski