Vogesella sp. EB

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Vogesella; unclassified Vogesella

Average proteome isoelectric point is 6.64

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3143 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0J5G365|A0A0J5G365_9NEIS Glutamate-1-semialdehyde 2 1-aminomutase OS=Vogesella sp. EB OX=1526735 GN=hemL PE=3 SV=1
MM1 pKa = 6.19QTWMCLICGFIYY13 pKa = 10.63DD14 pKa = 4.06EE15 pKa = 4.36AAGRR19 pKa = 11.84PEE21 pKa = 5.18DD22 pKa = 4.91GIPPGTKK29 pKa = 9.09WEE31 pKa = 4.15DD32 pKa = 3.3VPMNWTCPDD41 pKa = 3.22CDD43 pKa = 3.45ARR45 pKa = 11.84KK46 pKa = 10.36DD47 pKa = 3.96DD48 pKa = 4.12FEE50 pKa = 4.42MMAFF54 pKa = 3.93

Molecular weight: 6.24 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0J5GD06|A0A0J5GD06_9NEIS Uncharacterized protein OS=Vogesella sp. EB OX=1526735 GN=ACG97_15320 PE=4 SV=1
MM1 pKa = 7.82KK2 pKa = 10.46LRR4 pKa = 11.84LQRR7 pKa = 11.84MLWLVAGWLCLLLALIGALLPVMPTTVFVLMAAACFGRR45 pKa = 11.84SSPALLHH52 pKa = 6.29WLHH55 pKa = 6.04HH56 pKa = 6.27HH57 pKa = 6.81PRR59 pKa = 11.84LGPPLLQWQRR69 pKa = 11.84YY70 pKa = 8.01HH71 pKa = 7.93GMTARR76 pKa = 11.84TKK78 pKa = 10.2AVALGTVALSFSFSIYY94 pKa = 9.9ATLQQPWLTALLLLLWAALSLWMWRR119 pKa = 11.84LPTIPATSACCAMLDD134 pKa = 4.0SKK136 pKa = 11.57SS137 pKa = 3.33

Molecular weight: 15.3 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3143

0

3143

978495

42

2924

311.3

33.97

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.324 ± 0.065

0.987 ± 0.016

5.377 ± 0.035

5.249 ± 0.042

3.55 ± 0.028

7.882 ± 0.038

2.328 ± 0.021

4.745 ± 0.034

3.455 ± 0.039

11.818 ± 0.072

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.434 ± 0.022

2.824 ± 0.027

4.745 ± 0.033

4.665 ± 0.041

6.407 ± 0.042

5.461 ± 0.032

4.686 ± 0.029

7.237 ± 0.041

1.373 ± 0.019

2.455 ± 0.021
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski