Leuconostoc phage LDG

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Mccleskeyvirinae; Limdunavirus; Leuconostoc virus LDG

Average proteome isoelectric point is 6.44

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 40 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A219VG52|A0A219VG52_9CAUD Lysin OS=Leuconostoc phage LDG OX=1897539 PE=4 SV=1
MM1 pKa = 7.0TTFDD5 pKa = 3.51YY6 pKa = 10.99QKK8 pKa = 10.76YY9 pKa = 10.68LNVDD13 pKa = 3.38DD14 pKa = 5.04DD15 pKa = 4.92TYY17 pKa = 11.61SDD19 pKa = 3.04WSGTIEE25 pKa = 4.08EE26 pKa = 5.23LEE28 pKa = 3.87NSAINRR34 pKa = 11.84AQRR37 pKa = 11.84LNPTITIDD45 pKa = 3.54TTNKK49 pKa = 10.17NLYY52 pKa = 9.14EE53 pKa = 4.06YY54 pKa = 9.58AKK56 pKa = 9.37EE57 pKa = 3.94VIYY60 pKa = 10.55IGIFGDD66 pKa = 3.89ALTPALWQYY75 pKa = 11.21HH76 pKa = 5.65DD77 pKa = 4.64SKK79 pKa = 11.05MSDD82 pKa = 2.97LEE84 pKa = 4.45EE85 pKa = 4.19YY86 pKa = 9.86FRR88 pKa = 11.84WWQEE92 pKa = 3.34

Molecular weight: 11.01 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A219VG66|A0A219VG66_9CAUD Uncharacterized protein OS=Leuconostoc phage LDG OX=1897539 PE=4 SV=1
MM1 pKa = 7.22SKK3 pKa = 9.98VRR5 pKa = 11.84RR6 pKa = 11.84EE7 pKa = 3.62RR8 pKa = 11.84HH9 pKa = 5.33KK10 pKa = 11.31NLVFWRR16 pKa = 11.84QIGKK20 pKa = 7.63TLNKK24 pKa = 9.95VEE26 pKa = 4.2THH28 pKa = 5.9HH29 pKa = 6.66NKK31 pKa = 9.34PRR33 pKa = 11.84WRR35 pKa = 11.84QWEE38 pKa = 3.91KK39 pKa = 11.38AEE41 pKa = 3.97YY42 pKa = 10.29EE43 pKa = 4.3RR44 pKa = 11.84IFKK47 pKa = 10.4KK48 pKa = 10.77

Molecular weight: 6.2 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

40

0

40

8106

48

614

202.7

22.73

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.218 ± 0.486

0.123 ± 0.041

6.329 ± 0.528

5.095 ± 0.439

4.577 ± 0.217

6.662 ± 0.587

1.369 ± 0.22

7.143 ± 0.294

7.316 ± 0.447

8.315 ± 0.346

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.295 ± 0.141

6.686 ± 0.388

2.911 ± 0.217

4.589 ± 0.242

3.22 ± 0.216

7.562 ± 0.486

7.254 ± 0.386

6.711 ± 0.316

1.16 ± 0.138

4.466 ± 0.423
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski