Rhodoplanes sp. Z2-YC6860

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Hyphomicrobiales; Hyphomicrobiaceae; Rhodoplanes; unclassified Rhodoplanes

Average proteome isoelectric point is 7.11

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7007 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A127F2H4|A0A127F2H4_9RHIZ Transglutaminase family protein OS=Rhodoplanes sp. Z2-YC6860 OX=674703 GN=RHPLAN_53590 PE=4 SV=1
MM1 pKa = 7.41ATQSTGGGSTTSFGNAPQAVDD22 pKa = 3.69DD23 pKa = 4.73TFTSAQTGLTEE34 pKa = 4.92DD35 pKa = 3.84LLKK38 pKa = 10.84VVYY41 pKa = 10.19LDD43 pKa = 4.61VMANDD48 pKa = 4.2LGGNAKK54 pKa = 8.39TLFSIDD60 pKa = 3.0NGIYY64 pKa = 10.01TGTTVQSDD72 pKa = 4.59LLTQDD77 pKa = 3.25TARR80 pKa = 11.84AEE82 pKa = 4.14ATSADD87 pKa = 3.8TSLKK91 pKa = 9.86GAKK94 pKa = 8.94IWITSDD100 pKa = 3.07GKK102 pKa = 10.92VGYY105 pKa = 9.4DD106 pKa = 3.7ASTLSQSFKK115 pKa = 10.79DD116 pKa = 3.62QLSALHH122 pKa = 6.38AGEE125 pKa = 4.52YY126 pKa = 9.51LTDD129 pKa = 3.33TFTYY133 pKa = 10.22AIRR136 pKa = 11.84LGNGTLSWATATVQFAGANDD156 pKa = 3.84TATITASGNEE166 pKa = 4.08DD167 pKa = 3.49TTVVEE172 pKa = 5.15SGGTNNTTLGDD183 pKa = 3.9PSASGQLTVNDD194 pKa = 3.39VDD196 pKa = 3.69SGEE199 pKa = 4.21NHH201 pKa = 6.07FQTPSSLAGTYY212 pKa = 7.56GTYY215 pKa = 10.13TFNATSGVWGYY226 pKa = 7.48TLNQSLADD234 pKa = 4.22PLTAGQVVYY243 pKa = 10.97DD244 pKa = 3.61HH245 pKa = 7.16LIVKK249 pKa = 9.91SADD252 pKa = 3.01GTASHH257 pKa = 7.67DD258 pKa = 3.46IAVKK262 pKa = 9.05ITGSNDD268 pKa = 2.92SATITASSTEE278 pKa = 3.99DD279 pKa = 3.27TSVKK283 pKa = 10.1EE284 pKa = 4.06AGGVSNGAAGDD295 pKa = 3.99PSAHH299 pKa = 6.15GQLTVHH305 pKa = 6.84DD306 pKa = 4.15VDD308 pKa = 3.83SGEE311 pKa = 4.18NHH313 pKa = 6.06FQTPASLAGTYY324 pKa = 7.56GTYY327 pKa = 10.11TFNEE331 pKa = 4.36TSGAWGYY338 pKa = 7.48TLNQSLADD346 pKa = 4.02SLTDD350 pKa = 3.5GQVVHH355 pKa = 7.06DD356 pKa = 4.18HH357 pKa = 6.98LIVKK361 pKa = 10.02SADD364 pKa = 3.11NTTSYY369 pKa = 11.08DD370 pKa = 3.04IDD372 pKa = 3.74VTITGTNDD380 pKa = 2.91AATITASATEE390 pKa = 4.03DD391 pKa = 3.53TSVKK395 pKa = 10.09EE396 pKa = 4.06AGGVSNGTAGDD407 pKa = 4.0PSAHH411 pKa = 6.11GQLTVHH417 pKa = 6.84DD418 pKa = 4.15VDD420 pKa = 3.83SGEE423 pKa = 4.18NHH425 pKa = 6.06FQTPASLAGTYY436 pKa = 7.56GTYY439 pKa = 10.11TFNATTGAWSYY450 pKa = 9.67TLNQSIADD458 pKa = 3.9SLYY461 pKa = 10.5DD462 pKa = 3.41GQVAHH467 pKa = 7.2DD468 pKa = 3.93HH469 pKa = 6.53LIVRR473 pKa = 11.84SADD476 pKa = 3.06NTASYY481 pKa = 10.28DD482 pKa = 3.52INIDD486 pKa = 3.28ILGTNDD492 pKa = 3.37AAVLSSASVNLTEE505 pKa = 5.42GDD507 pKa = 3.5TAADD511 pKa = 3.28ISTSGTLTISDD522 pKa = 4.02VDD524 pKa = 3.93SDD526 pKa = 3.94PHH528 pKa = 7.41FVAQTDD534 pKa = 3.57TAGNYY539 pKa = 10.28GKK541 pKa = 10.63FSIDD545 pKa = 3.9ADD547 pKa = 4.3GAWSYY552 pKa = 11.37VADD555 pKa = 3.71SAHH558 pKa = 6.42NEE560 pKa = 3.9FAAGQHH566 pKa = 4.67YY567 pKa = 9.5TEE569 pKa = 4.84SFDD572 pKa = 4.0VVSADD577 pKa = 3.51GTHH580 pKa = 6.32TSVAIDD586 pKa = 3.13ILGTNDD592 pKa = 3.19AATVAFDD599 pKa = 3.73TVSFSDD605 pKa = 3.31TGSNDD610 pKa = 3.15GDD612 pKa = 3.64HH613 pKa = 6.58LTNNNAVTFSGSYY626 pKa = 10.42SDD628 pKa = 3.99VDD630 pKa = 3.64GTVTQIQVFNGSTSLGFATLATGTWTLNTALVDD663 pKa = 3.89GSYY666 pKa = 10.85NQLRR670 pKa = 11.84VLATDD675 pKa = 3.41NNRR678 pKa = 11.84ATTEE682 pKa = 4.07ATNPTQIIVDD692 pKa = 3.95TLNPTVSSVSINDD705 pKa = 3.47NQITDD710 pKa = 3.35GDD712 pKa = 3.96AAGIRR717 pKa = 11.84TATITFSEE725 pKa = 4.59AMDD728 pKa = 3.54QTSTPTISNSASSTLTSPTGGHH750 pKa = 5.61WVDD753 pKa = 3.3ATHH756 pKa = 6.64YY757 pKa = 9.99AINYY761 pKa = 5.83TAADD765 pKa = 3.51AGVTLNDD772 pKa = 2.73ITFNVSGAKK781 pKa = 10.09DD782 pKa = 3.3LAGNTQAAATNVSSGTSVDD801 pKa = 3.55TQNPTNTWSFSTSSKK816 pKa = 10.61AITVTASDD824 pKa = 3.34SSGIGSVTAVDD835 pKa = 3.72NTHH838 pKa = 7.22PGQGFAAAVNNGNGTWTIATSPSANINGDD867 pKa = 3.71SVTVTVTDD875 pKa = 3.71GAGNVTTSTHH885 pKa = 5.67NAPAGVAGSLINLGLTDD902 pKa = 4.53PSVDD906 pKa = 3.44HH907 pKa = 6.94IGAVSTVISGIPAGWILSEE926 pKa = 4.76GADD929 pKa = 3.26NGNGNWAVQTDD940 pKa = 3.75NLAALSIISSAAFTGALVLNVTEE963 pKa = 4.26TWTNADD969 pKa = 3.44GSNGTSIVSDD979 pKa = 3.56NVEE982 pKa = 4.03VFATGSPIFAWSGDD996 pKa = 3.5DD997 pKa = 3.93HH998 pKa = 6.67LTGSSGRR1005 pKa = 11.84DD1006 pKa = 2.94LFVFSQPIGADD1017 pKa = 3.34VIHH1020 pKa = 6.69NFDD1023 pKa = 3.87AAADD1027 pKa = 3.9QIDD1030 pKa = 4.64LIDD1033 pKa = 3.6YY1034 pKa = 9.59HH1035 pKa = 8.06SEE1037 pKa = 3.75SGATLTYY1044 pKa = 11.1ADD1046 pKa = 4.58LQSLLSQDD1054 pKa = 3.47GAGNAVISLGNGQSITLDD1072 pKa = 3.47GVHH1075 pKa = 6.83AADD1078 pKa = 3.78LSEE1081 pKa = 4.53ANFVFDD1087 pKa = 4.58VTPTLDD1093 pKa = 3.25NAGTMTIGDD1102 pKa = 4.06GAMLPLSGIINNTGTIEE1119 pKa = 4.2LDD1121 pKa = 3.47SAGSSTLLQLIQYY1134 pKa = 8.84GITLQGNGTVVLSDD1148 pKa = 3.19NDD1150 pKa = 3.79GNVISGSVQSVTLHH1164 pKa = 6.18NLDD1167 pKa = 3.5NTIEE1171 pKa = 4.31GAGQLGAGQLDD1182 pKa = 4.04LTNDD1186 pKa = 3.32GTIIANGSHH1195 pKa = 6.8ALVIDD1200 pKa = 3.64TGANVIEE1207 pKa = 4.13NAGMLEE1213 pKa = 3.96ATGTGGLVINSALEE1227 pKa = 3.82NDD1229 pKa = 4.12GLVWAHH1235 pKa = 6.77GGNITLSGAVTGSGSVQIDD1254 pKa = 3.36GNAKK1258 pKa = 9.3VSFGAVASVNTNIAADD1274 pKa = 3.71SASTVTVHH1282 pKa = 7.89DD1283 pKa = 4.05SFDD1286 pKa = 3.68FSGVISGFNGDD1297 pKa = 3.9DD1298 pKa = 3.82HH1299 pKa = 7.07MDD1301 pKa = 3.42LTDD1304 pKa = 3.3VMFSAGLTVNYY1315 pKa = 9.73AAAADD1320 pKa = 4.02GTGGVLQVSDD1330 pKa = 4.18GAHH1333 pKa = 5.67TANIALLGQYY1343 pKa = 9.23DD1344 pKa = 3.56ASGFRR1349 pKa = 11.84AGADD1353 pKa = 3.43SSSGTSITYY1362 pKa = 9.94DD1363 pKa = 3.21PHH1365 pKa = 5.61HH1366 pKa = 6.32TVV1368 pKa = 3.04

Molecular weight: 138.86 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A127F6W2|A0A127F6W2_9RHIZ Elongation factor P OS=Rhodoplanes sp. Z2-YC6860 OX=674703 GN=efp PE=3 SV=1
MM1 pKa = 7.35KK2 pKa = 9.43RR3 pKa = 11.84TYY5 pKa = 10.27QPSKK9 pKa = 9.73LVRR12 pKa = 11.84KK13 pKa = 9.15RR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.65GFRR19 pKa = 11.84ARR21 pKa = 11.84LKK23 pKa = 7.72TTGGRR28 pKa = 11.84KK29 pKa = 8.99VLAARR34 pKa = 11.84RR35 pKa = 11.84ARR37 pKa = 11.84GRR39 pKa = 11.84KK40 pKa = 9.03RR41 pKa = 11.84LSAA44 pKa = 4.03

Molecular weight: 5.18 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7007

0

7007

2322162

29

10376

331.4

35.96

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.2 ± 0.038

0.835 ± 0.009

5.432 ± 0.025

5.192 ± 0.031

3.764 ± 0.018

8.428 ± 0.032

2.043 ± 0.014

5.305 ± 0.02

4.035 ± 0.029

9.646 ± 0.036

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.532 ± 0.016

2.86 ± 0.026

5.503 ± 0.023

3.24 ± 0.019

6.694 ± 0.039

5.504 ± 0.028

5.47 ± 0.048

7.65 ± 0.023

1.337 ± 0.011

2.33 ± 0.014
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski