Canine papillomavirus 21

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Taupapillomavirus; unclassified Taupapillomavirus

Average proteome isoelectric point is 6.85

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A346M193|A0A346M193_9PAPI Major capsid protein L1 OS=Canine papillomavirus 21 OX=2304619 GN=L1 PE=3 SV=1
MM1 pKa = 7.69IGNKK5 pKa = 8.06PTIADD10 pKa = 3.74VEE12 pKa = 4.61LEE14 pKa = 4.07LSDD17 pKa = 5.13LVLPVDD23 pKa = 4.38LLSGEE28 pKa = 4.25SLDD31 pKa = 4.63AEE33 pKa = 4.49EE34 pKa = 5.27EE35 pKa = 4.44EE36 pKa = 4.37PLQPYY41 pKa = 9.55RR42 pKa = 11.84VVTNCGRR49 pKa = 11.84CSCTLSLCVAVGEE62 pKa = 4.24RR63 pKa = 11.84AQLLRR68 pKa = 11.84FQQLFIDD75 pKa = 5.06GLTFVCVTCAKK86 pKa = 9.49GQRR89 pKa = 11.84HH90 pKa = 5.11GRR92 pKa = 11.84RR93 pKa = 3.45

Molecular weight: 10.24 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A346M191|A0A346M191_9PAPI Protein E6 OS=Canine papillomavirus 21 OX=2304619 GN=E6 PE=3 SV=1
MM1 pKa = 7.15TRR3 pKa = 11.84RR4 pKa = 11.84TVVNTRR10 pKa = 11.84RR11 pKa = 11.84GHH13 pKa = 5.72TYY15 pKa = 8.53TMRR18 pKa = 11.84TVTMSGVKK26 pKa = 9.81CRR28 pKa = 11.84EE29 pKa = 3.72RR30 pKa = 11.84LTTKK34 pKa = 10.19ACIMRR39 pKa = 11.84MRR41 pKa = 11.84MVILTTMWTSTKK53 pKa = 9.98RR54 pKa = 11.84PCSIVKK60 pKa = 8.7VEE62 pKa = 4.71CGRR65 pKa = 11.84SVIKK69 pKa = 10.41ICAFLLLFLARR80 pKa = 11.84DD81 pKa = 4.05PPRR84 pKa = 11.84PSPPPTPRR92 pKa = 11.84PGGPHH97 pKa = 6.36HH98 pKa = 7.07GEE100 pKa = 4.32HH101 pKa = 6.24LTASHH106 pKa = 7.51PEE108 pKa = 4.07PGHH111 pKa = 5.68GGEE114 pKa = 4.24RR115 pKa = 11.84ARR117 pKa = 11.84AAGAEE122 pKa = 4.22GGRR125 pKa = 11.84GRR127 pKa = 11.84GRR129 pKa = 11.84GRR131 pKa = 11.84GRR133 pKa = 11.84GRR135 pKa = 11.84GRR137 pKa = 11.84GRR139 pKa = 11.84GPTSAPAASSSLQFLAAATTRR160 pKa = 11.84RR161 pKa = 11.84PPRR164 pKa = 11.84SRR166 pKa = 11.84GGNAAGEE173 pKa = 4.56GGG175 pKa = 3.48

Molecular weight: 18.73 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

0

7

2524

93

613

360.6

40.16

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.537 ± 0.397

2.813 ± 0.822

6.3 ± 0.859

5.666 ± 0.317

4.12 ± 0.601

7.528 ± 1.063

2.456 ± 0.325

3.368 ± 0.556

4.952 ± 0.738

8.162 ± 0.834

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.219 ± 0.42

3.605 ± 0.798

6.735 ± 0.984

3.803 ± 0.447

7.369 ± 1.583

7.964 ± 0.729

6.418 ± 0.581

6.062 ± 0.67

1.387 ± 0.343

2.536 ± 0.428
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski