Rodent arterivirus

Taxonomy: Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Nidovirales; Arnidovirineae; Arteriviridae; unclassified Arteriviridae

Average proteome isoelectric point is 7.7

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 8 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2H4MYU6|A0A2H4MYU6_9NIDO GP5 protein OS=Rodent arterivirus OX=1806636 PE=4 SV=1
MM1 pKa = 7.34GPSLLFMLVGVVGFHH16 pKa = 6.57FSEE19 pKa = 5.77GYY21 pKa = 9.62ACKK24 pKa = 9.61PCYY27 pKa = 9.27GASYY31 pKa = 10.56VDD33 pKa = 3.73RR34 pKa = 11.84ASKK37 pKa = 10.55SSAVAPLAVTPLSCDD52 pKa = 3.26RR53 pKa = 11.84DD54 pKa = 3.49EE55 pKa = 5.83DD56 pKa = 4.13KK57 pKa = 11.28EE58 pKa = 4.28KK59 pKa = 10.14TLSLRR64 pKa = 11.84GTPAMVCKK72 pKa = 10.56QGDD75 pKa = 3.85SKK77 pKa = 11.36GFKK80 pKa = 9.97INDD83 pKa = 3.46VIEE86 pKa = 4.45IKK88 pKa = 10.5DD89 pKa = 3.89DD90 pKa = 3.84YY91 pKa = 11.04SGSSADD97 pKa = 4.01LLFFTACMIYY107 pKa = 10.04GLEE110 pKa = 4.04MAEE113 pKa = 4.32KK114 pKa = 10.69GLGPEE119 pKa = 4.97LKK121 pKa = 9.83NCSGTPCMCVPFSSWVAHH139 pKa = 4.82VRR141 pKa = 11.84EE142 pKa = 4.5KK143 pKa = 11.33GGDD146 pKa = 3.42QQVQRR151 pKa = 11.84GLFTNMSPHH160 pKa = 6.18GLRR163 pKa = 11.84WATVITCLLAILLAII178 pKa = 4.82

Molecular weight: 19.19 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2H4MXK5|A0A2H4MXK5_9NIDO Membrane protein OS=Rodent arterivirus OX=1806636 PE=4 SV=1
MM1 pKa = 7.69WPQLCIACSPMPLKK15 pKa = 10.95SFLFLSLIFFFFLGSCSPSQLPGGSSSSWFSLFSLRR51 pKa = 11.84PAARR55 pKa = 11.84PVVLDD60 pKa = 3.17MSSFQKK66 pKa = 10.48MSDD69 pKa = 3.29DD70 pKa = 4.16AVRR73 pKa = 11.84HH74 pKa = 5.45CAAAIPPWLSHH85 pKa = 6.46PLGIAFNGAIVDD97 pKa = 3.53KK98 pKa = 9.77MKK100 pKa = 10.87RR101 pKa = 11.84LIARR105 pKa = 11.84LSMANYY111 pKa = 8.89QGRR114 pKa = 11.84VAWAEE119 pKa = 3.92QQLLSPTLLRR129 pKa = 11.84DD130 pKa = 4.02LSNKK134 pKa = 9.36TIVKK138 pKa = 9.59HH139 pKa = 4.62FVVMAGLEE147 pKa = 4.21TGLCQYY153 pKa = 8.67ITANMHH159 pKa = 5.87RR160 pKa = 11.84VMIAASASLRR170 pKa = 11.84NMTITKK176 pKa = 10.47NEE178 pKa = 4.08TTGEE182 pKa = 4.05WLIHH186 pKa = 5.66RR187 pKa = 11.84QQAPIEE193 pKa = 4.2LNHH196 pKa = 6.62FYY198 pKa = 10.8KK199 pKa = 10.22WVTWYY204 pKa = 10.42RR205 pKa = 11.84GSIFSAVSAALTLWVVILLRR225 pKa = 11.84IRR227 pKa = 11.84RR228 pKa = 11.84RR229 pKa = 3.39

Molecular weight: 25.82 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

8

0

8

5110

70

3914

638.8

69.99

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.198 ± 0.471

3.151 ± 0.3

4.403 ± 0.832

4.07 ± 0.524

4.305 ± 0.528

6.986 ± 0.454

2.348 ± 0.248

4.266 ± 0.803

4.54 ± 0.424

9.902 ± 0.565

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.114 ± 0.477

3.131 ± 0.243

6.654 ± 1.099

3.405 ± 0.522

4.971 ± 0.337

7.378 ± 0.554

5.812 ± 0.262

8.454 ± 0.484

1.8 ± 0.504

3.112 ± 0.457
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski