Gordonia phage Jumbo

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Gorjumvirus; Gordonia virus Jumbo

Average proteome isoelectric point is 6.04

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 102 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1B3B0P5|A0A1B3B0P5_9CAUD Uncharacterized protein OS=Gordonia phage Jumbo OX=1887650 GN=77 PE=4 SV=1
MM1 pKa = 7.64SDD3 pKa = 3.44EE4 pKa = 4.78PIKK7 pKa = 10.73FLVEE11 pKa = 3.55VTYY14 pKa = 10.39TPGISKK20 pKa = 10.17GYY22 pKa = 9.2YY23 pKa = 7.97PEE25 pKa = 4.1NVKK28 pKa = 9.22TPRR31 pKa = 11.84EE32 pKa = 3.82AVIYY36 pKa = 9.8DD37 pKa = 4.02LEE39 pKa = 4.39SEE41 pKa = 4.34YY42 pKa = 11.45SDD44 pKa = 4.0FFQILDD50 pKa = 3.83GADD53 pKa = 3.33SLTVIEE59 pKa = 5.14IGGEE63 pKa = 4.11KK64 pKa = 10.07YY65 pKa = 10.39VEE67 pKa = 4.4PPQEE71 pKa = 3.67

Molecular weight: 8.05 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1B3B0V3|A0A1B3B0V3_9CAUD Uncharacterized protein OS=Gordonia phage Jumbo OX=1887650 GN=60 PE=4 SV=1
MM1 pKa = 7.44ILVMTPDD8 pKa = 3.25KK9 pKa = 10.66TVTAMICSDD18 pKa = 4.21RR19 pKa = 11.84NRR21 pKa = 11.84ADD23 pKa = 3.42YY24 pKa = 11.3GNKK27 pKa = 9.73CEE29 pKa = 4.26KK30 pKa = 10.2NKK32 pKa = 10.75SKK34 pKa = 10.32IYY36 pKa = 9.33RR37 pKa = 11.84ARR39 pKa = 11.84EE40 pKa = 3.53RR41 pKa = 11.84RR42 pKa = 11.84EE43 pKa = 3.65FARR46 pKa = 11.84DD47 pKa = 3.1TARR50 pKa = 11.84YY51 pKa = 8.83LSRR54 pKa = 11.84RR55 pKa = 11.84RR56 pKa = 3.5

Molecular weight: 6.74 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

102

0

102

24151

42

3069

236.8

26.11

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.366 ± 0.795

0.927 ± 0.149

6.377 ± 0.33

6.269 ± 0.314

3.785 ± 0.181

8.157 ± 0.493

1.892 ± 0.179

5.884 ± 0.153

5.275 ± 0.263

7.155 ± 0.241

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.567 ± 0.122

4.571 ± 0.135

5.176 ± 0.325

3.673 ± 0.189

5.391 ± 0.298

6.277 ± 0.224

6.12 ± 0.166

6.401 ± 0.23

1.611 ± 0.094

3.126 ± 0.194
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski