Blastopirellula marina DSM 3645

Taxonomy: cellular organisms; Bacteria; PVC group; Planctomycetes; Planctomycetia; Pirellulales; Pirellulaceae; Blastopirellula; Blastopirellula marina

Average proteome isoelectric point is 6.14

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6010 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A3ZPB0|A3ZPB0_9BACT Fe(III) dicitrate ABC transporter permease OS=Blastopirellula marina DSM 3645 OX=314230 GN=DSM3645_28442 PE=3 SV=1
MM1 pKa = 7.51KK2 pKa = 10.05LCRR5 pKa = 11.84WICLFITMWIAGPVYY20 pKa = 10.78AEE22 pKa = 4.29TLSIDD27 pKa = 3.21ATADD31 pKa = 3.3GSSRR35 pKa = 11.84WSEE38 pKa = 3.99YY39 pKa = 10.62FSDD42 pKa = 5.0AFVQLDD48 pKa = 4.12HH49 pKa = 6.95QPGSYY54 pKa = 10.36LISEE58 pKa = 4.47YY59 pKa = 10.46EE60 pKa = 3.69ADD62 pKa = 3.54GSYY65 pKa = 11.17VPVGDD70 pKa = 4.24GSQIAFLNDD79 pKa = 2.77GDD81 pKa = 4.35FNSFFDD87 pKa = 4.71IEE89 pKa = 4.24FTAPAGRR96 pKa = 11.84SGTVAIDD103 pKa = 3.36AFTADD108 pKa = 4.13FDD110 pKa = 5.79DD111 pKa = 7.02FIADD115 pKa = 4.09DD116 pKa = 4.18DD117 pKa = 5.78AIFNTGYY124 pKa = 9.19ATTINSFTGTATFVGGVISQIDD146 pKa = 4.07LLADD150 pKa = 3.26IMLTYY155 pKa = 10.28DD156 pKa = 3.1ASGFGLGMLDD166 pKa = 3.46YY167 pKa = 10.82AGTFAITGAEE177 pKa = 3.93FALFADD183 pKa = 5.14GSYY186 pKa = 8.89EE187 pKa = 4.24TGFTPARR194 pKa = 11.84YY195 pKa = 8.69VWDD198 pKa = 3.54VTGTLDD204 pKa = 4.87LPEE207 pKa = 5.34PPTATPEE214 pKa = 4.36PGSLLLAVVGGVGLLTFRR232 pKa = 11.84RR233 pKa = 11.84RR234 pKa = 11.84RR235 pKa = 11.84KK236 pKa = 9.78RR237 pKa = 11.84VTAEE241 pKa = 3.48

Molecular weight: 25.95 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A3ZVR0|A3ZVR0_9BACT Uncharacterized protein OS=Blastopirellula marina DSM 3645 OX=314230 GN=DSM3645_02983 PE=4 SV=1
MM1 pKa = 7.31TPILKK6 pKa = 10.33GALSLGRR13 pKa = 11.84TFGRR17 pKa = 11.84RR18 pKa = 11.84LISVSSGWQRR28 pKa = 11.84RR29 pKa = 11.84RR30 pKa = 11.84FTKK33 pKa = 10.41KK34 pKa = 10.06SRR36 pKa = 3.27

Molecular weight: 4.15 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6010

0

6010

1930168

20

9105

321.2

35.37

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.331 ± 0.039

1.112 ± 0.014

5.959 ± 0.031

6.294 ± 0.03

3.762 ± 0.02

7.518 ± 0.035

2.103 ± 0.017

5.305 ± 0.023

3.843 ± 0.03

9.884 ± 0.037

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.294 ± 0.017

3.228 ± 0.024

5.158 ± 0.028

4.322 ± 0.024

6.313 ± 0.042

6.237 ± 0.031

5.39 ± 0.036

6.866 ± 0.029

1.471 ± 0.014

2.612 ± 0.027
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski