Mycobacterium phage Llama

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Cheoctovirus; unclassified Cheoctovirus

Average proteome isoelectric point is 6.14

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 111 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A088FWF7|A0A088FWF7_9CAUD Uncharacterized protein OS=Mycobacterium phage Llama OX=1541823 GN=82 PE=4 SV=1
MM1 pKa = 7.44TCLLCDD7 pKa = 4.01HH8 pKa = 7.18PRR10 pKa = 11.84STHH13 pKa = 5.0TPQCRR18 pKa = 11.84VRR20 pKa = 11.84LGVDD24 pKa = 2.92ADD26 pKa = 3.62DD27 pKa = 3.59MTRR30 pKa = 11.84YY31 pKa = 6.71TQCLCPGFEE40 pKa = 4.22GTEE43 pKa = 4.11EE44 pKa = 5.26EE45 pKa = 4.28EE46 pKa = 4.68DD47 pKa = 3.38TWLDD51 pKa = 3.26

Molecular weight: 5.88 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A088FW61|A0A088FW61_9CAUD Holin OS=Mycobacterium phage Llama OX=1541823 GN=32 PE=4 SV=1
MM1 pKa = 6.83QASAKK6 pKa = 9.73HH7 pKa = 6.14CLEE10 pKa = 3.96AMPPKK15 pKa = 9.4QCTYY19 pKa = 8.12VTYY22 pKa = 11.07VLTKK26 pKa = 9.79NYY28 pKa = 10.15SPLVSRR34 pKa = 11.84LTLGIARR41 pKa = 11.84RR42 pKa = 11.84GGRR45 pKa = 11.84TNFPQMEE52 pKa = 4.95KK53 pKa = 10.08ILAFAPLGRR62 pKa = 11.84SQEE65 pKa = 4.12PVRR68 pKa = 4.75

Molecular weight: 7.62 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

111

0

111

18761

25

1252

169.0

18.47

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.778 ± 0.499

1.157 ± 0.168

6.455 ± 0.244

6.028 ± 0.361

3.001 ± 0.208

8.891 ± 0.607

2.271 ± 0.187

4.301 ± 0.19

3.374 ± 0.205

7.233 ± 0.224

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.196 ± 0.125

3.177 ± 0.159

5.911 ± 0.184

3.561 ± 0.188

6.945 ± 0.429

6.119 ± 0.306

6.641 ± 0.248

7.18 ± 0.248

2.313 ± 0.152

2.468 ± 0.159
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski