Invertebrate iridescent virus 6 (IIV-6) (Chilo iridescent virus)

Taxonomy: Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; Pimascovirales; Iridoviridae; Betairidovirinae; Iridovirus

Average proteome isoelectric point is 7.5

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 468 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q91F62|Q91F62_IIV6 464R OS=Invertebrate iridescent virus 6 OX=176652 PE=4 SV=1
MM1 pKa = 7.89DD2 pKa = 6.41AIFYY6 pKa = 7.34PLPIGEE12 pKa = 4.38TGDD15 pKa = 3.47NEE17 pKa = 4.62KK18 pKa = 10.92YY19 pKa = 10.91LEE21 pKa = 4.61DD22 pKa = 3.83FQEE25 pKa = 4.02EE26 pKa = 4.43DD27 pKa = 3.5FQEE30 pKa = 4.1EE31 pKa = 4.4DD32 pKa = 3.48FQEE35 pKa = 4.1EE36 pKa = 4.4DD37 pKa = 3.48FQEE40 pKa = 4.1EE41 pKa = 4.39DD42 pKa = 3.57FQEE45 pKa = 4.15EE46 pKa = 4.47DD47 pKa = 3.31EE48 pKa = 4.93DD49 pKa = 4.97EE50 pKa = 4.35EE51 pKa = 4.88DD52 pKa = 4.09EE53 pKa = 4.7EE54 pKa = 4.81VNEE57 pKa = 4.24YY58 pKa = 10.4PSDD61 pKa = 4.45LDD63 pKa = 5.18DD64 pKa = 5.23EE65 pKa = 5.3YY66 pKa = 10.89PDD68 pKa = 3.16SDD70 pKa = 4.49YY71 pKa = 11.61YY72 pKa = 10.99DD73 pKa = 3.73EE74 pKa = 5.96RR75 pKa = 11.84SDD77 pKa = 4.48RR78 pKa = 11.84HH79 pKa = 5.63WSDD82 pKa = 4.15DD83 pKa = 4.22DD84 pKa = 4.42SDD86 pKa = 5.29RR87 pKa = 11.84DD88 pKa = 4.11LDD90 pKa = 4.03DD91 pKa = 6.41LYY93 pKa = 11.47DD94 pKa = 3.81EE95 pKa = 4.61YY96 pKa = 11.47EE97 pKa = 3.93NYY99 pKa = 10.21YY100 pKa = 10.99EE101 pKa = 3.99EE102 pKa = 4.59VQVKK106 pKa = 9.4KK107 pKa = 10.83QNLEE111 pKa = 3.83VEE113 pKa = 4.9IIDD116 pKa = 3.4ITPEE120 pKa = 4.14IEE122 pKa = 4.31ILNQNEE128 pKa = 4.2KK129 pKa = 10.92EE130 pKa = 4.19KK131 pKa = 10.94FNQVEE136 pKa = 4.41DD137 pKa = 3.8KK138 pKa = 10.67LTTLSKK144 pKa = 11.01NLTCIICLTNQVQILTIPCGHH165 pKa = 7.83LIMCNPCSLNLNNSVCTRR183 pKa = 11.84GVNSNYY189 pKa = 9.41EE190 pKa = 4.04KK191 pKa = 10.67CPKK194 pKa = 9.99CRR196 pKa = 11.84TPIYY200 pKa = 10.18NKK202 pKa = 10.17IIARR206 pKa = 11.84LPP208 pKa = 3.51

Molecular weight: 24.71 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>sp|O55725|107L_IIV6 Uncharacterized protein 107L OS=Invertebrate iridescent virus 6 OX=176652 GN=IIV6-107L PE=4 SV=1
MM1 pKa = 7.8PICVLRR7 pKa = 11.84KK8 pKa = 8.41SPKK11 pKa = 9.43RR12 pKa = 11.84RR13 pKa = 11.84SPSPKK18 pKa = 8.89RR19 pKa = 11.84RR20 pKa = 11.84RR21 pKa = 11.84SPKK24 pKa = 8.61RR25 pKa = 11.84RR26 pKa = 11.84SPRR29 pKa = 11.84RR30 pKa = 11.84SPRR33 pKa = 11.84RR34 pKa = 11.84SPRR37 pKa = 11.84RR38 pKa = 11.84SPPRR42 pKa = 11.84RR43 pKa = 11.84RR44 pKa = 11.84SPRR47 pKa = 11.84RR48 pKa = 11.84STRR51 pKa = 11.84RR52 pKa = 11.84SPRR55 pKa = 11.84RR56 pKa = 11.84RR57 pKa = 3.32

Molecular weight: 7.06 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

464

4

468

77551

40

2432

165.7

19.0

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

3.739 ± 0.282

1.881 ± 0.099

4.793 ± 0.131

5.919 ± 0.242

5.571 ± 0.196

4.716 ± 0.276

1.877 ± 0.086

8.814 ± 0.132

8.683 ± 0.299

9.729 ± 0.133

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.605 ± 0.082

7.132 ± 0.131

3.883 ± 0.126

3.484 ± 0.09

3.462 ± 0.161

7.723 ± 0.287

5.791 ± 0.297

5.362 ± 0.113

0.896 ± 0.047

3.941 ± 0.16
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski