Cellulophaga tyrosinoxydans

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Cellulophaga

Average proteome isoelectric point is 6.54

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3140 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1W2CPN8|A0A1W2CPN8_9FLAO DUF1080 domain-containing protein OS=Cellulophaga tyrosinoxydans OX=504486 GN=SAMN05660703_3116 PE=4 SV=1
MM1 pKa = 7.49KK2 pKa = 10.39LSNLIYY8 pKa = 10.4AFSYY12 pKa = 10.39LVAISFFASCNNDD25 pKa = 3.5DD26 pKa = 5.69DD27 pKa = 6.38NDD29 pKa = 3.95TTMMPDD35 pKa = 3.15MNADD39 pKa = 3.88FSGTYY44 pKa = 10.14AQVDD48 pKa = 3.28HH49 pKa = 6.84MGRR52 pKa = 11.84PGINTVLSADD62 pKa = 3.68NATKK66 pKa = 10.84DD67 pKa = 3.6MQNITLPSNMAAAFQASFEE86 pKa = 4.24ARR88 pKa = 11.84LEE90 pKa = 4.36AYY92 pKa = 9.99HH93 pKa = 7.19DD94 pKa = 3.93VYY96 pKa = 11.81ANILGADD103 pKa = 3.93PAAVNYY109 pKa = 8.37EE110 pKa = 3.92NNILGLTAAQLTGYY124 pKa = 9.89LAADD128 pKa = 3.97VLDD131 pKa = 3.96VAPNLPTTYY140 pKa = 10.18FNPGTDD146 pKa = 2.92ADD148 pKa = 3.67MDD150 pKa = 3.93GRR152 pKa = 11.84ILVPDD157 pKa = 4.09GDD159 pKa = 4.2EE160 pKa = 4.01VALTGRR166 pKa = 11.84MLQDD170 pKa = 3.46DD171 pKa = 5.09VIDD174 pKa = 3.67VSLILLFGGMEE185 pKa = 4.25GNRR188 pKa = 11.84FSGQDD193 pKa = 3.34TNGDD197 pKa = 3.38GMADD201 pKa = 4.24LPRR204 pKa = 11.84LTSDD208 pKa = 3.64GVSITANPTTTFPYY222 pKa = 10.2LANPEE227 pKa = 4.06

Molecular weight: 24.29 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1W1Z5S4|A0A1W1Z5S4_9FLAO Uncharacterized protein OS=Cellulophaga tyrosinoxydans OX=504486 GN=SAMN05660703_1196 PE=4 SV=1
MM1 pKa = 7.84PSGKK5 pKa = 9.32KK6 pKa = 9.59RR7 pKa = 11.84KK8 pKa = 7.05RR9 pKa = 11.84HH10 pKa = 5.11KK11 pKa = 10.59VATHH15 pKa = 5.21KK16 pKa = 10.3RR17 pKa = 11.84KK18 pKa = 9.62KK19 pKa = 9.04RR20 pKa = 11.84RR21 pKa = 11.84RR22 pKa = 11.84ANRR25 pKa = 11.84HH26 pKa = 4.5KK27 pKa = 10.78KK28 pKa = 9.37KK29 pKa = 10.83

Molecular weight: 3.63 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3140

0

3140

1080595

29

4873

344.1

38.73

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.607 ± 0.038

0.729 ± 0.014

5.519 ± 0.034

6.476 ± 0.045

5.228 ± 0.031

6.404 ± 0.048

1.669 ± 0.022

8.12 ± 0.041

7.903 ± 0.068

9.411 ± 0.053

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.139 ± 0.026

6.37 ± 0.057

3.333 ± 0.03

3.258 ± 0.021

3.175 ± 0.025

6.474 ± 0.038

5.944 ± 0.065

6.148 ± 0.033

1.039 ± 0.02

4.053 ± 0.034
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski