Giant panda circovirus 3

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cirlivirales; Circoviridae; Circovirus; unclassified Circovirus

Average proteome isoelectric point is 7.5

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A220IGT2|A0A220IGT2_9CIRC Capsid protein OS=Giant panda circovirus 3 OX=2016458 PE=4 SV=1
MM1 pKa = 6.66TQEE4 pKa = 3.59ITQISDD10 pKa = 3.37ANDD13 pKa = 3.1VSDD16 pKa = 3.77SFEE19 pKa = 4.03TKK21 pKa = 10.68FIVKK25 pKa = 9.8NSKK28 pKa = 10.03QVTTVINTSNASVLCQSYY46 pKa = 8.63FCRR49 pKa = 11.84VRR51 pKa = 11.84YY52 pKa = 9.89DD53 pKa = 2.77IGTGQNYY60 pKa = 9.58QDD62 pKa = 3.92LCQLLGDD69 pKa = 4.42GFFQRR74 pKa = 11.84GLDD77 pKa = 3.84TQSGSANSGVSDD89 pKa = 4.44ASLTPFDD96 pKa = 3.52SHH98 pKa = 6.98KK99 pKa = 10.14FCSYY103 pKa = 10.67FNIFKK108 pKa = 8.76VQKK111 pKa = 10.02YY112 pKa = 7.41EE113 pKa = 4.15LEE115 pKa = 4.5AGATKK120 pKa = 10.15MLTVQTNKK128 pKa = 10.08PYY130 pKa = 10.25TVNTSHH136 pKa = 7.4LFTGSSRR143 pKa = 11.84TFPPTFSPCILHH155 pKa = 6.84KK156 pKa = 10.23KK157 pKa = 10.37GEE159 pKa = 4.26MFVFTKK165 pKa = 10.66FEE167 pKa = 4.72GIPADD172 pKa = 3.76SQSGQWYY179 pKa = 5.71TTPKK183 pKa = 10.35LDD185 pKa = 4.41TITKK189 pKa = 6.75THH191 pKa = 6.15YY192 pKa = 10.28NYY194 pKa = 10.69VMLSPNPPTLLRR206 pKa = 11.84KK207 pKa = 8.94PATGYY212 pKa = 7.07TAPGANALTIMQEE225 pKa = 3.82EE226 pKa = 4.59SGNNVPQTNAA236 pKa = 3.22

Molecular weight: 26.11 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A220IGT2|A0A220IGT2_9CIRC Capsid protein OS=Giant panda circovirus 3 OX=2016458 PE=4 SV=1
MM1 pKa = 7.51TNFFFVIFHH10 pKa = 6.8LLITFPNMTPRR21 pKa = 11.84NISDD25 pKa = 3.2YY26 pKa = 9.06HH27 pKa = 6.45CAVSFCTQPYY37 pKa = 8.64QDD39 pKa = 4.63SGYY42 pKa = 8.9MCYY45 pKa = 10.41FSAAPNARR53 pKa = 11.84RR54 pKa = 11.84AYY56 pKa = 9.89RR57 pKa = 11.84SLPSRR62 pKa = 11.84SNMVARR68 pKa = 11.84KK69 pKa = 9.39SFLRR73 pKa = 11.84ARR75 pKa = 11.84ASKK78 pKa = 9.68RR79 pKa = 11.84RR80 pKa = 11.84PRR82 pKa = 11.84RR83 pKa = 11.84RR84 pKa = 11.84VVKK87 pKa = 10.24RR88 pKa = 11.84KK89 pKa = 9.41RR90 pKa = 11.84VARR93 pKa = 11.84KK94 pKa = 7.97PRR96 pKa = 11.84RR97 pKa = 11.84RR98 pKa = 11.84TRR100 pKa = 11.84KK101 pKa = 6.86TPKK104 pKa = 10.39NGVQWKK110 pKa = 7.96PANILSLDD118 pKa = 3.63YY119 pKa = 11.54DD120 pKa = 3.82NADD123 pKa = 3.36TRR125 pKa = 11.84LVTAGSAIQGKK136 pKa = 9.23RR137 pKa = 11.84CPP139 pKa = 3.8

Molecular weight: 16.2 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3

0

3

674

139

299

224.7

25.73

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.38 ± 0.988

2.819 ± 0.3

4.748 ± 0.4

4.303 ± 1.613

6.231 ± 0.153

6.231 ± 1.112

2.077 ± 0.309

3.858 ± 0.162

6.083 ± 0.128

5.341 ± 0.423

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.374 ± 0.172

5.786 ± 0.246

4.451 ± 1.15

4.599 ± 0.808

7.27 ± 3.067

8.012 ± 0.563

8.012 ± 1.621

5.045 ± 0.357

1.78 ± 0.778

4.599 ± 0.208
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski