Geodermatophilus sp. LHW52908

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Geodermatophilales; Geodermatophilaceae; Geodermatophilus; unclassified Geodermatophilus

Average proteome isoelectric point is 6.39

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4784 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A372IY23|A0A372IY23_9ACTN Uncharacterized protein OS=Geodermatophilus sp. LHW52908 OX=2303986 GN=D0Z06_18850 PE=4 SV=1
MM1 pKa = 7.37RR2 pKa = 11.84HH3 pKa = 4.91VLSRR7 pKa = 11.84AIAAAAVGSVLLAGCSSTVTGTASAARR34 pKa = 11.84PVTDD38 pKa = 3.3VTAEE42 pKa = 3.95EE43 pKa = 4.34FLVTGATDD51 pKa = 3.57SDD53 pKa = 3.08IDD55 pKa = 3.75RR56 pKa = 11.84YY57 pKa = 10.77ARR59 pKa = 11.84NALADD64 pKa = 3.64LTTFWEE70 pKa = 3.95QAYY73 pKa = 9.68PEE75 pKa = 4.87FYY77 pKa = 10.99GEE79 pKa = 4.84PLTPLQGGYY88 pKa = 10.49FSVDD92 pKa = 2.74ADD94 pKa = 4.93DD95 pKa = 4.66IDD97 pKa = 3.8EE98 pKa = 4.29SRR100 pKa = 11.84YY101 pKa = 9.21PPTGVGCARR110 pKa = 11.84LPIDD114 pKa = 3.62PAEE117 pKa = 4.19VEE119 pKa = 4.39GNAFYY124 pKa = 10.91EE125 pKa = 4.44LNCDD129 pKa = 3.79VIVYY133 pKa = 9.96DD134 pKa = 4.69SSLLQEE140 pKa = 4.68LGEE143 pKa = 3.94LHH145 pKa = 7.03GRR147 pKa = 11.84FLGPAVMAHH156 pKa = 6.07EE157 pKa = 5.65FGHH160 pKa = 6.59AMQGRR165 pKa = 11.84FGFSEE170 pKa = 3.89VTIRR174 pKa = 11.84DD175 pKa = 3.63EE176 pKa = 4.19TQADD180 pKa = 4.0CFAGAFTRR188 pKa = 11.84WVVDD192 pKa = 3.6GNAEE196 pKa = 4.07HH197 pKa = 6.23VALRR201 pKa = 11.84VSEE204 pKa = 4.5LDD206 pKa = 3.56DD207 pKa = 3.49VLLGFIEE214 pKa = 4.44LRR216 pKa = 11.84DD217 pKa = 3.81PVGLTDD223 pKa = 3.54EE224 pKa = 4.59TVEE227 pKa = 4.27GAHH230 pKa = 6.45GSGFDD235 pKa = 3.47RR236 pKa = 11.84VSGFYY241 pKa = 10.3AGYY244 pKa = 7.7TGGVGTCRR252 pKa = 11.84DD253 pKa = 3.38EE254 pKa = 4.58FGPEE258 pKa = 3.61RR259 pKa = 11.84VFTAAEE265 pKa = 3.61FDD267 pKa = 3.77EE268 pKa = 5.99AEE270 pKa = 4.27EE271 pKa = 4.06ATEE274 pKa = 4.36GNADD278 pKa = 3.5YY279 pKa = 11.62ADD281 pKa = 3.26IQEE284 pKa = 4.27IVEE287 pKa = 4.13LSLPAFYY294 pKa = 10.61DD295 pKa = 3.1SWFPQVGGAAFDD307 pKa = 3.87APAIEE312 pKa = 4.97PFDD315 pKa = 3.89GTAPACGDD323 pKa = 3.36MGAEE327 pKa = 4.0DD328 pKa = 4.67RR329 pKa = 11.84DD330 pKa = 4.07LGFCAADD337 pKa = 3.29STVYY341 pKa = 10.97ADD343 pKa = 3.71EE344 pKa = 4.61TDD346 pKa = 3.81LLRR349 pKa = 11.84PAYY352 pKa = 10.25QEE354 pKa = 4.17FGDD357 pKa = 4.22FAVATAISLPYY368 pKa = 9.77AQAARR373 pKa = 11.84AQLGLSTDD381 pKa = 3.89DD382 pKa = 3.48SAGTISTVCLTGWYY396 pKa = 9.59AARR399 pKa = 11.84FFDD402 pKa = 5.5GDD404 pKa = 3.59FADD407 pKa = 4.55TEE409 pKa = 4.38LSPGDD414 pKa = 3.47VDD416 pKa = 4.06EE417 pKa = 6.64AILFLLGHH425 pKa = 6.05GQDD428 pKa = 4.95DD429 pKa = 4.02SVLPNVEE436 pKa = 3.89LSGFEE441 pKa = 3.75LVGAFRR447 pKa = 11.84DD448 pKa = 4.01GFLQGGTACDD458 pKa = 3.73LGVV461 pKa = 3.23

Molecular weight: 49.02 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A372IXK3|A0A372IXK3_9ACTN Uncharacterized protein OS=Geodermatophilus sp. LHW52908 OX=2303986 GN=D0Z06_23070 PE=4 SV=1
MM1 pKa = 7.57PHH3 pKa = 7.03RR4 pKa = 11.84PQPASSRR11 pKa = 11.84TAAPRR16 pKa = 11.84TVPRR20 pKa = 11.84STARR24 pKa = 11.84PSTAPPSTAPPSTAPPSTAPRR45 pKa = 11.84STAHH49 pKa = 7.24RR50 pKa = 11.84STGPSPTAPRR60 pKa = 11.84RR61 pKa = 11.84TGPRR65 pKa = 11.84RR66 pKa = 11.84AGGTAPPVTPRR77 pKa = 11.84PRR79 pKa = 11.84RR80 pKa = 11.84TPAPSRR86 pKa = 11.84PRR88 pKa = 11.84ARR90 pKa = 3.61

Molecular weight: 9.33 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4784

0

4784

1526184

24

2587

319.0

33.76

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

15.01 ± 0.054

0.698 ± 0.009

6.082 ± 0.027

5.535 ± 0.034

2.474 ± 0.022

10.026 ± 0.033

2.063 ± 0.016

2.346 ± 0.025

1.113 ± 0.019

10.761 ± 0.04

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.486 ± 0.013

1.261 ± 0.016

6.562 ± 0.04

2.463 ± 0.019

8.817 ± 0.039

4.333 ± 0.021

5.766 ± 0.028

10.0 ± 0.04

1.512 ± 0.018

1.691 ± 0.016
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski