Deinococcus puniceus

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus

Average proteome isoelectric point is 6.61

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2606 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A172T6X9|A0A172T6X9_9DEIO Peptidyl-prolyl cis-trans isomerase OS=Deinococcus puniceus OX=1182568 GN=SU48_02320 PE=3 SV=1
MM1 pKa = 7.45LNVADD6 pKa = 4.73YY7 pKa = 11.41GDD9 pKa = 4.43APTAYY14 pKa = 10.16GNVAHH19 pKa = 6.85LPVLGWNGGTLGAGTNTIFPNTNTAPTFGLATQIPPTTALLGSVVDD65 pKa = 4.24VEE67 pKa = 4.54RR68 pKa = 11.84TSQANATATADD79 pKa = 3.79DD80 pKa = 4.8ANSIDD85 pKa = 4.98DD86 pKa = 4.03EE87 pKa = 5.99DD88 pKa = 4.91GVTMPASVMIGNVVTLPVAIGAAGLLSAWFDD119 pKa = 3.49WNRR122 pKa = 11.84DD123 pKa = 2.7GDD125 pKa = 3.88FADD128 pKa = 4.29AGEE131 pKa = 4.84QITSDD136 pKa = 3.11NSVSVGTTNLSVTVPTNAVAGTTFARR162 pKa = 11.84FRR164 pKa = 11.84ICTAAASCNSPTGVSPSGEE183 pKa = 4.07VEE185 pKa = 4.31DD186 pKa = 4.36YY187 pKa = 11.19SLVVMPTTADD197 pKa = 3.5LNINKK202 pKa = 8.23TGPSTVVQGSLATYY216 pKa = 8.48TITVWNKK223 pKa = 9.87GPGNSTGATISDD235 pKa = 4.03PVPSNLTNVNWTCAASDD252 pKa = 3.56TAACGIAGGSGNTINFVSGILPVNASATAPISGSYY287 pKa = 8.53LTLTVTGTATTSGTLINTASVTAAPGTTDD316 pKa = 3.73PVPGNNSSSQSTTVTAAMPVQPAINLKK343 pKa = 10.16KK344 pKa = 10.13YY345 pKa = 9.1VRR347 pKa = 11.84NVTTGTAFSEE357 pKa = 4.64TSTTARR363 pKa = 11.84PKK365 pKa = 10.66DD366 pKa = 3.31IIEE369 pKa = 4.06YY370 pKa = 10.18CITYY374 pKa = 10.35INAGGNAANFKK385 pKa = 9.62LTDD388 pKa = 3.66NVPAGMIVQLDD399 pKa = 4.27AYY401 pKa = 10.45AAGQGILWNSTSNTVSGNTTPAGTNLTNAPSDD433 pKa = 3.77DD434 pKa = 3.82AGTLTGADD442 pKa = 3.9TLPPIDD448 pKa = 3.88FTVHH452 pKa = 5.11GTNNTGLLTLDD463 pKa = 4.5LSATGLANLGKK474 pKa = 9.45GTVCFRR480 pKa = 11.84TQIPP484 pKa = 3.4

Molecular weight: 48.72 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A172TCG9|A0A172TCG9_9DEIO Transcriptional regulator OS=Deinococcus puniceus OX=1182568 GN=SU48_00050 PE=4 SV=1
MM1 pKa = 7.62LSLPAAKK8 pKa = 9.8PLTPARR14 pKa = 11.84RR15 pKa = 11.84PQPAIPRR22 pKa = 11.84QPLTRR27 pKa = 11.84RR28 pKa = 11.84TTAASQTTQWPVFRR42 pKa = 11.84PGHH45 pKa = 6.33KK46 pKa = 9.6LQQAHH51 pKa = 6.74RR52 pKa = 11.84PPHH55 pKa = 5.92RR56 pKa = 11.84KK57 pKa = 8.49PRR59 pKa = 11.84QARR62 pKa = 11.84GARR65 pKa = 11.84PFPP68 pKa = 4.4

Molecular weight: 7.71 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2606

0

2606

801718

47

3650

307.6

33.07

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.726 ± 0.073

0.531 ± 0.013

5.126 ± 0.039

5.351 ± 0.058

3.169 ± 0.03

9.126 ± 0.057

2.052 ± 0.033

3.864 ± 0.043

2.757 ± 0.046

11.366 ± 0.069

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.967 ± 0.025

2.704 ± 0.038

5.729 ± 0.042

3.684 ± 0.03

6.804 ± 0.048

5.11 ± 0.035

6.369 ± 0.064

7.912 ± 0.037

1.33 ± 0.022

2.325 ± 0.022
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski