Abaca bunchy top virus

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Mulpavirales; Nanoviridae; Babuvirus

Average proteome isoelectric point is 6.78

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|B0LBX8|B0LBX8_9VIRU Putative replicase protein OS=Abaca bunchy top virus OX=438782 PE=3 SV=1
MM1 pKa = 7.36EE2 pKa = 5.25FWNSEE7 pKa = 4.15AFCDD11 pKa = 4.4DD12 pKa = 3.3VKK14 pKa = 11.06RR15 pKa = 11.84VIKK18 pKa = 9.97QKK20 pKa = 9.88YY21 pKa = 6.47WEE23 pKa = 4.24EE24 pKa = 3.88RR25 pKa = 11.84MKK27 pKa = 11.05SLFIEE32 pKa = 4.4KK33 pKa = 9.75VSGYY37 pKa = 7.39VRR39 pKa = 11.84RR40 pKa = 11.84ILVYY44 pKa = 10.93GNLDD48 pKa = 3.26DD49 pKa = 5.1TIYY52 pKa = 11.05AVQQMKK58 pKa = 10.02TSIVQCAEE66 pKa = 4.07RR67 pKa = 11.84FGKK70 pKa = 10.63ACVVVYY76 pKa = 10.9NGLDD80 pKa = 3.29PSIGFRR86 pKa = 11.84LHH88 pKa = 5.12TMAFFFEE95 pKa = 4.89EE96 pKa = 4.44YY97 pKa = 10.51VEE99 pKa = 4.41EE100 pKa = 4.6VSTADD105 pKa = 3.39PMAVQLFCDD114 pKa = 3.76EE115 pKa = 4.73EE116 pKa = 4.52IEE118 pKa = 4.34EE119 pKa = 4.45FSNSDD124 pKa = 2.72VRR126 pKa = 11.84LIKK129 pKa = 10.48NVIMASTDD137 pKa = 2.98ASIDD141 pKa = 3.42VGNCIQIIISDD152 pKa = 4.01NVITFYY158 pKa = 10.64ICC160 pKa = 3.93

Molecular weight: 18.48 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|B0LBX6|B0LBX6_9VIRU Putative movement protein OS=Abaca bunchy top virus OX=438782 PE=4 SV=1
MM1 pKa = 7.47ARR3 pKa = 11.84YY4 pKa = 7.86PKK6 pKa = 10.25KK7 pKa = 10.47ALKK10 pKa = 9.65KK11 pKa = 9.15RR12 pKa = 11.84KK13 pKa = 9.18AVRR16 pKa = 11.84RR17 pKa = 11.84KK18 pKa = 9.05YY19 pKa = 10.53GSKK22 pKa = 9.24ATTSHH27 pKa = 7.45DD28 pKa = 3.87YY29 pKa = 11.28AVDD32 pKa = 3.22TSFIVPEE39 pKa = 4.09NTIKK43 pKa = 10.84LYY45 pKa = 10.62RR46 pKa = 11.84IEE48 pKa = 4.53PTDD51 pKa = 3.32KK52 pKa = 10.0TLPRR56 pKa = 11.84YY57 pKa = 8.25FIWKK61 pKa = 8.52MFMLLVCKK69 pKa = 10.16VRR71 pKa = 11.84PGRR74 pKa = 11.84ILHH77 pKa = 5.9WAMIKK82 pKa = 10.53SSWDD86 pKa = 3.3VKK88 pKa = 11.19DD89 pKa = 3.33PTVVLEE95 pKa = 4.3APGLFIKK102 pKa = 9.86PANSHH107 pKa = 5.5LVKK110 pKa = 10.42LVCSGEE116 pKa = 4.02LEE118 pKa = 4.2APVGGGTSEE127 pKa = 4.26VEE129 pKa = 3.73CLLRR133 pKa = 11.84KK134 pKa = 6.69TTLLRR139 pKa = 11.84RR140 pKa = 11.84NVTEE144 pKa = 5.47LDD146 pKa = 3.4FLYY149 pKa = 10.93LAFYY153 pKa = 10.02CSSGVTINYY162 pKa = 7.97QNRR165 pKa = 11.84ITYY168 pKa = 9.37HH169 pKa = 4.27VV170 pKa = 3.46

Molecular weight: 19.53 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

886

116

286

177.2

20.46

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.079 ± 0.547

3.047 ± 0.538

4.74 ± 0.759

7.336 ± 1.159

4.628 ± 0.558

6.095 ± 0.716

1.58 ± 0.251

7.336 ± 0.758

5.982 ± 0.925

6.321 ± 1.205

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.499 ± 0.39

4.176 ± 0.737

3.95 ± 0.673

3.273 ± 0.716

6.659 ± 0.548

5.643 ± 0.989

5.305 ± 0.769

8.126 ± 0.752

1.58 ± 0.102

5.53 ± 0.432
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski