Rhizobium oryzae

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Hyphomicrobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium

Average proteome isoelectric point is 6.54

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4627 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1Q9AUC5|A0A1Q9AUC5_9RHIZ Protein SlyX homolog OS=Rhizobium oryzae OX=464029 GN=slyX PE=3 SV=1
MM1 pKa = 6.7STEE4 pKa = 4.24TKK6 pKa = 9.57VLPMISGTSANDD18 pKa = 3.68YY19 pKa = 10.23IASTGSGATLVGGAGNDD36 pKa = 3.59LYY38 pKa = 11.07FVTSADD44 pKa = 3.47DD45 pKa = 4.19VIIEE49 pKa = 4.43KK50 pKa = 10.06PGEE53 pKa = 4.56GIDD56 pKa = 4.06SVITYY61 pKa = 7.49RR62 pKa = 11.84TSYY65 pKa = 9.9TLGDD69 pKa = 3.5NVEE72 pKa = 4.21NLSVLGNDD80 pKa = 4.11LYY82 pKa = 11.64GVGNALDD89 pKa = 3.75NVLVGGSGRR98 pKa = 11.84QTLVGGAGNDD108 pKa = 3.7TLTGGAGSDD117 pKa = 3.51IFVLTQGGGSDD128 pKa = 4.0TITDD132 pKa = 4.38FDD134 pKa = 4.8ASDD137 pKa = 3.28IVQLGVYY144 pKa = 9.18GFKK147 pKa = 10.93NFAEE151 pKa = 4.48VSDD154 pKa = 5.48SLVQDD159 pKa = 3.56NANVVLKK166 pKa = 11.06LNDD169 pKa = 3.53GSQLTFLNKK178 pKa = 9.77TIADD182 pKa = 3.97FQSSNFQYY190 pKa = 11.55ALDD193 pKa = 4.03TSHH196 pKa = 7.34LKK198 pKa = 8.15QTFADD203 pKa = 3.91EE204 pKa = 4.8FNTLSLQQEE213 pKa = 4.28GGMWRR218 pKa = 11.84TWHH221 pKa = 6.55NNGLSDD227 pKa = 5.24GGQAYY232 pKa = 10.42LNPTNSTGVNPFSVTDD248 pKa = 4.08GVLTIHH254 pKa = 7.49ADD256 pKa = 3.66RR257 pKa = 11.84ASAEE261 pKa = 4.19TAALTGKK268 pKa = 9.73EE269 pKa = 4.05FTSGIMSTRR278 pKa = 11.84DD279 pKa = 3.31TFSQTYY285 pKa = 9.57GYY287 pKa = 10.79FEE289 pKa = 4.27IRR291 pKa = 11.84ADD293 pKa = 3.74LPSQKK298 pKa = 10.12GVCPAFWLLPANGSWPPEE316 pKa = 3.67LDD318 pKa = 3.2VFEE321 pKa = 4.69QVGNDD326 pKa = 3.45PSKK329 pKa = 11.33VYY331 pKa = 9.19LTAHH335 pKa = 6.16SNSTGTPTATGISSWIGDD353 pKa = 3.91TGEE356 pKa = 4.18GMHH359 pKa = 6.67TYY361 pKa = 10.87GLLWTKK367 pKa = 10.89DD368 pKa = 3.38VLVWYY373 pKa = 10.17LDD375 pKa = 3.26GVEE378 pKa = 4.72AYY380 pKa = 10.35RR381 pKa = 11.84IATPADD387 pKa = 3.33MHH389 pKa = 5.61QAMYY393 pKa = 10.7LVTNMSVGGGFAGSTDD409 pKa = 3.33ASFTGADD416 pKa = 3.54FKK418 pKa = 10.92IDD420 pKa = 3.92YY421 pKa = 9.74IHH423 pKa = 7.88AYY425 pKa = 8.44QLEE428 pKa = 4.61EE429 pKa = 3.96NLGTRR434 pKa = 11.84QSITGEE440 pKa = 3.79KK441 pKa = 9.72WSITLDD447 pKa = 3.54NNGDD451 pKa = 3.93DD452 pKa = 3.81VTLTGTLNINATGNAKK468 pKa = 10.63DD469 pKa = 4.31NILIGNSGNNTLDD482 pKa = 3.54GKK484 pKa = 11.01VGADD488 pKa = 3.46TMIGGQGDD496 pKa = 3.55DD497 pKa = 3.72TYY499 pKa = 11.34IVDD502 pKa = 3.53NAGDD506 pKa = 3.83VVVEE510 pKa = 4.15NANEE514 pKa = 4.1GTDD517 pKa = 3.46TVRR520 pKa = 11.84ASISYY525 pKa = 9.59VLGANVEE532 pKa = 4.32KK533 pKa = 11.02LFLTGTDD540 pKa = 3.48NLHH543 pKa = 5.44GTGNEE548 pKa = 4.15LDD550 pKa = 3.4NTIYY554 pKa = 10.96GNSGDD559 pKa = 3.96NVINGAGGADD569 pKa = 3.72VMIGGAGNDD578 pKa = 2.99IYY580 pKa = 11.65YY581 pKa = 10.36VDD583 pKa = 3.98NPGDD587 pKa = 4.09IVTEE591 pKa = 4.41WSNGGIDD598 pKa = 3.62TVYY601 pKa = 11.21SSISYY606 pKa = 10.08ALPNQVEE613 pKa = 4.31NLTLTGSDD621 pKa = 4.14NIDD624 pKa = 3.26ATGNWMDD631 pKa = 5.24NILIGNDD638 pKa = 3.13GNNVLRR644 pKa = 11.84GMGGTDD650 pKa = 3.19TLIGGKK656 pKa = 10.23GDD658 pKa = 3.21DD659 pKa = 3.73TYY661 pKa = 11.93YY662 pKa = 11.03VDD664 pKa = 5.13SDD666 pKa = 3.54DD667 pKa = 4.83TIIEE671 pKa = 4.26KK672 pKa = 10.64ADD674 pKa = 3.35GGIDD678 pKa = 3.35TVYY681 pKa = 11.04ASSSYY686 pKa = 9.6TLSANVEE693 pKa = 4.28TLILTGNWTSNGTGNNLDD711 pKa = 3.76NLLIGNSCANTLDD724 pKa = 3.71GGRR727 pKa = 11.84GADD730 pKa = 3.58TMIGGAGNDD739 pKa = 3.55TYY741 pKa = 11.24FVDD744 pKa = 3.76NPGDD748 pKa = 3.65IVIEE752 pKa = 4.1NAGEE756 pKa = 4.23GVDD759 pKa = 3.65RR760 pKa = 11.84VYY762 pKa = 11.57SSISYY767 pKa = 8.6TLTANVEE774 pKa = 4.16MLLLTGKK781 pKa = 10.58ADD783 pKa = 4.28LNATGNSLSNTIYY796 pKa = 11.13GNDD799 pKa = 3.63GNNIIDD805 pKa = 4.33GGTGADD811 pKa = 3.34TMSGQGGNDD820 pKa = 3.06TYY822 pKa = 11.61YY823 pKa = 11.16VDD825 pKa = 4.55NIYY828 pKa = 11.17DD829 pKa = 5.15KK830 pKa = 10.83IIEE833 pKa = 4.14WSNGGIDD840 pKa = 3.65TVLSSVSYY848 pKa = 10.77SLADD852 pKa = 3.37NVEE855 pKa = 3.82NLTLIGLANLNATGNWQDD873 pKa = 4.11NILIGNAGNNILDD886 pKa = 3.89GSKK889 pKa = 10.84GADD892 pKa = 3.36LMKK895 pKa = 10.82GGAGDD900 pKa = 3.36DD901 pKa = 3.8TYY903 pKa = 11.24IVEE906 pKa = 4.32NVGDD910 pKa = 3.91VVVEE914 pKa = 4.1NPGEE918 pKa = 4.44GIDD921 pKa = 4.12TVKK924 pKa = 10.64SWISYY929 pKa = 9.81RR930 pKa = 11.84LTDD933 pKa = 3.74NVEE936 pKa = 3.96KK937 pKa = 11.06LMLQSAGNINGYY949 pKa = 10.88GNDD952 pKa = 4.0LDD954 pKa = 3.95NTIVGSIGNNIIDD967 pKa = 4.26GGAGADD973 pKa = 3.5RR974 pKa = 11.84MQGGLGNDD982 pKa = 3.44TYY984 pKa = 11.78YY985 pKa = 11.23VDD987 pKa = 3.82NPGDD991 pKa = 4.6LVIEE995 pKa = 4.47WSGEE999 pKa = 4.13GNDD1002 pKa = 3.9TVYY1005 pKa = 11.34SSISYY1010 pKa = 8.48TLVNNVEE1017 pKa = 3.96NLILTGTANLDD1028 pKa = 3.48GCGNGLDD1035 pKa = 3.68NTLIGNDD1042 pKa = 3.39GNNRR1046 pKa = 11.84LDD1048 pKa = 3.71GGAGNDD1054 pKa = 3.35ILQGGLGVDD1063 pKa = 3.83ILNGGAGNDD1072 pKa = 3.3TFVFKK1077 pKa = 9.84TAADD1081 pKa = 4.03SAVGTPDD1088 pKa = 4.62TINDD1092 pKa = 3.73FQKK1095 pKa = 11.34GDD1097 pKa = 3.86IIDD1100 pKa = 4.16LRR1102 pKa = 11.84DD1103 pKa = 3.54MYY1105 pKa = 11.06AGTMTFLGTGDD1116 pKa = 3.68FTGHH1120 pKa = 5.97SGEE1123 pKa = 4.35VQISAYY1129 pKa = 10.55GKK1131 pKa = 8.77GTMINIDD1138 pKa = 3.81LDD1140 pKa = 3.9GDD1142 pKa = 3.72KK1143 pKa = 10.99HH1144 pKa = 7.55IDD1146 pKa = 3.45SQIFVANLQPSNFASQGGIFLLL1168 pKa = 4.47

Molecular weight: 122.05 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1Q9AT48|A0A1Q9AT48_9RHIZ 3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Rhizobium oryzae OX=464029 GN=BJF93_17060 PE=3 SV=1
MM1 pKa = 7.42FWRR4 pKa = 11.84SAAFAVAWAVGHH16 pKa = 5.95ASKK19 pKa = 10.57RR20 pKa = 11.84RR21 pKa = 11.84PATKK25 pKa = 8.71SAMMTHH31 pKa = 7.01HH32 pKa = 6.61VRR34 pKa = 11.84ILLITRR40 pKa = 11.84PILPLGKK47 pKa = 10.02KK48 pKa = 10.15FKK50 pKa = 10.84LFLKK54 pKa = 10.3APRR57 pKa = 11.84RR58 pKa = 11.84ASS60 pKa = 3.14

Molecular weight: 6.83 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4627

0

4627

1480217

28

3204

319.9

34.68

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.825 ± 0.055

0.76 ± 0.01

5.711 ± 0.032

5.639 ± 0.032

3.78 ± 0.021

8.373 ± 0.031

2.039 ± 0.015

5.345 ± 0.025

3.278 ± 0.029

10.503 ± 0.048

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.527 ± 0.017

2.486 ± 0.023

5.069 ± 0.028

3.198 ± 0.021

7.076 ± 0.036

5.564 ± 0.027

5.288 ± 0.035

7.159 ± 0.026

1.229 ± 0.014

2.152 ± 0.019
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski