Strawberry vein banding virus

Taxonomy: Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Caulimoviridae; Caulimovirus

Average proteome isoelectric point is 6.69

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q88441|Q88441_9VIRU Coat protein OS=Strawberry vein banding virus OX=47903 GN=ORF IV PE=3 SV=1
MM1 pKa = 7.67GSVTQKK7 pKa = 8.87TEE9 pKa = 4.06RR10 pKa = 11.84IYY12 pKa = 11.37DD13 pKa = 3.52EE14 pKa = 4.02MLKK17 pKa = 9.47MEE19 pKa = 4.36EE20 pKa = 3.9RR21 pKa = 11.84FSRR24 pKa = 11.84LEE26 pKa = 3.93QEE28 pKa = 4.46QQDD31 pKa = 4.0HH32 pKa = 6.3FSEE35 pKa = 5.62KK36 pKa = 9.3IDD38 pKa = 3.51QASAILLAEE47 pKa = 3.79IRR49 pKa = 11.84KK50 pKa = 8.8IQSKK54 pKa = 11.17LEE56 pKa = 3.94TCDD59 pKa = 3.53CNKK62 pKa = 10.55EE63 pKa = 3.83ILDD66 pKa = 3.79ALKK69 pKa = 10.89AQDD72 pKa = 3.21RR73 pKa = 11.84TKK75 pKa = 11.18NKK77 pKa = 10.31GSGPSNLDD85 pKa = 3.53ALDD88 pKa = 4.51LAHH91 pKa = 7.49KK92 pKa = 10.58DD93 pKa = 3.49NSPKK97 pKa = 10.33RR98 pKa = 11.84NPIRR102 pKa = 11.84GTEE105 pKa = 3.71NWHH108 pKa = 5.77PQDD111 pKa = 5.06LKK113 pKa = 9.48LTKK116 pKa = 8.98WW117 pKa = 3.24

Molecular weight: 13.57 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q88443|Q88443_9VIRU ORF VI protein OS=Strawberry vein banding virus OX=47903 GN=ORF VI PE=4 SV=1
MM1 pKa = 7.66EE2 pKa = 5.88NNLQLLEE9 pKa = 4.22EE10 pKa = 4.68LNHH13 pKa = 7.69LEE15 pKa = 4.73EE16 pKa = 4.64GWEE19 pKa = 3.95MLTDD23 pKa = 3.8EE24 pKa = 5.47DD25 pKa = 6.11FKK27 pKa = 11.43LQQNEE32 pKa = 4.33DD33 pKa = 3.81EE34 pKa = 4.43EE35 pKa = 4.46QLLEE39 pKa = 4.29SVDD42 pKa = 3.62SEE44 pKa = 4.44EE45 pKa = 5.18RR46 pKa = 11.84FSTLTKK52 pKa = 10.01TNPNSIYY59 pKa = 10.23IRR61 pKa = 11.84GNFYY65 pKa = 10.26FKK67 pKa = 10.67GYY69 pKa = 10.34KK70 pKa = 9.7KK71 pKa = 10.74YY72 pKa = 11.06SLDD75 pKa = 3.79LYY77 pKa = 10.59VDD79 pKa = 4.32TGASMCTANKK89 pKa = 10.02HH90 pKa = 5.49VIPEE94 pKa = 4.23EE95 pKa = 3.76FWVNAKK101 pKa = 10.44NPIRR105 pKa = 11.84ARR107 pKa = 11.84IANDD111 pKa = 3.53SIMTFNKK118 pKa = 9.43VAEE121 pKa = 4.13LMQVQIADD129 pKa = 3.66EE130 pKa = 4.3TFIIPTLYY138 pKa = 10.45QATTKK143 pKa = 11.15GDD145 pKa = 3.12ITLGNNFCRR154 pKa = 11.84LYY156 pKa = 10.98EE157 pKa = 4.01PFVQYY162 pKa = 11.36KK163 pKa = 11.03DD164 pKa = 3.49MITFHH169 pKa = 6.96KK170 pKa = 10.33DD171 pKa = 2.48GRR173 pKa = 11.84AVSTKK178 pKa = 10.15KK179 pKa = 8.48VTKK182 pKa = 10.07AYY184 pKa = 10.35FHH186 pKa = 6.73GLPGFLEE193 pKa = 4.35SKK195 pKa = 10.43KK196 pKa = 10.53VGSSTSTPNPEE207 pKa = 4.37NITPVTINQDD217 pKa = 3.72NISKK221 pKa = 9.95IFKK224 pKa = 10.13GEE226 pKa = 4.03EE227 pKa = 3.66IGEE230 pKa = 4.26SEE232 pKa = 4.41QLFSTISAYY241 pKa = 9.53TEE243 pKa = 4.01VEE245 pKa = 3.97KK246 pKa = 11.1LLDD249 pKa = 4.57SICSEE254 pKa = 4.35HH255 pKa = 7.0PLDD258 pKa = 4.66SRR260 pKa = 11.84INKK263 pKa = 9.53GKK265 pKa = 10.7FEE267 pKa = 4.02AQIALLDD274 pKa = 3.61TNKK277 pKa = 10.11IIKK280 pKa = 8.56CKK282 pKa = 9.69PMQYY286 pKa = 10.22SPQDD290 pKa = 3.24RR291 pKa = 11.84EE292 pKa = 3.95EE293 pKa = 4.08FKK295 pKa = 10.25TQIEE299 pKa = 4.31EE300 pKa = 4.11LLKK303 pKa = 10.97LGIIRR308 pKa = 11.84PSKK311 pKa = 10.44SPHH314 pKa = 6.05SSPAFMVRR322 pKa = 11.84NHH324 pKa = 6.76AEE326 pKa = 3.83IKK328 pKa = 9.7RR329 pKa = 11.84GKK331 pKa = 10.15ARR333 pKa = 11.84MVINYY338 pKa = 8.06KK339 pKa = 10.32KK340 pKa = 10.96LNDD343 pKa = 3.53HH344 pKa = 6.52TKK346 pKa = 10.7GDD348 pKa = 4.18GYY350 pKa = 11.37LLPNKK355 pKa = 9.54EE356 pKa = 4.03QLLQRR361 pKa = 11.84IGGKK365 pKa = 7.24TFYY368 pKa = 11.14SSFDD372 pKa = 3.75CKK374 pKa = 10.91SGFWQVRR381 pKa = 11.84LAPEE385 pKa = 5.06TIQLTAFSCPQGHH398 pKa = 5.69YY399 pKa = 9.03EE400 pKa = 3.94WLVMPFGLKK409 pKa = 9.04QAPAIFQRR417 pKa = 11.84HH418 pKa = 4.77MDD420 pKa = 3.46EE421 pKa = 4.83SLSNMYY427 pKa = 9.71PQFCAVYY434 pKa = 9.19VDD436 pKa = 4.82DD437 pKa = 6.12IIVFSKK443 pKa = 10.0TEE445 pKa = 4.01EE446 pKa = 3.83EE447 pKa = 4.28HH448 pKa = 6.5LGHH451 pKa = 6.61VKK453 pKa = 10.05IVLNRR458 pKa = 11.84CKK460 pKa = 10.63ALGIVLSKK468 pKa = 10.87KK469 pKa = 9.87KK470 pKa = 10.54AQLCKK475 pKa = 8.61TTINFLGLVIEE486 pKa = 4.63RR487 pKa = 11.84GNLKK491 pKa = 9.61VQSHH495 pKa = 6.75IGLHH499 pKa = 5.94LVAFPDD505 pKa = 3.61QLSDD509 pKa = 3.36RR510 pKa = 11.84NALQRR515 pKa = 11.84FLGLLNYY522 pKa = 9.96ISAYY526 pKa = 9.1FPKK529 pKa = 10.03IANLRR534 pKa = 11.84SPLQVKK540 pKa = 9.46LKK542 pKa = 11.05KK543 pKa = 10.31EE544 pKa = 4.27ITWSWTEE551 pKa = 3.54KK552 pKa = 9.89DD553 pKa = 3.3TEE555 pKa = 4.38TVRR558 pKa = 11.84KK559 pKa = 9.39IKK561 pKa = 10.77SLVKK565 pKa = 9.74TLPDD569 pKa = 4.37LYY571 pKa = 11.08NPSPEE576 pKa = 4.2DD577 pKa = 3.66KK578 pKa = 10.84PIIEE582 pKa = 5.18CDD584 pKa = 3.38ASDD587 pKa = 3.98DD588 pKa = 3.4HH589 pKa = 6.84WGAILKK595 pKa = 10.54AKK597 pKa = 10.21LPEE600 pKa = 4.37GKK602 pKa = 9.94EE603 pKa = 4.14VICRR607 pKa = 11.84YY608 pKa = 10.34ASGTFKK614 pKa = 10.46PAEE617 pKa = 4.16KK618 pKa = 10.04NYY620 pKa = 10.23HH621 pKa = 5.5SNEE624 pKa = 3.89KK625 pKa = 10.26EE626 pKa = 3.54ILSIIKK632 pKa = 9.95AIKK635 pKa = 9.99AFRR638 pKa = 11.84AYY640 pKa = 9.61ILPYY644 pKa = 9.78KK645 pKa = 10.45FLVRR649 pKa = 11.84TDD651 pKa = 3.64NTNAAYY657 pKa = 9.54FVRR660 pKa = 11.84TNIAGDD666 pKa = 3.7YY667 pKa = 8.76KK668 pKa = 10.47QSRR671 pKa = 11.84LVRR674 pKa = 11.84WQMALRR680 pKa = 11.84EE681 pKa = 3.91YY682 pKa = 10.99SFDD685 pKa = 3.45IEE687 pKa = 4.39HH688 pKa = 7.15VSGQKK693 pKa = 10.16NVLADD698 pKa = 3.1IMTRR702 pKa = 11.84EE703 pKa = 4.15LAGKK707 pKa = 7.03TT708 pKa = 3.48

Molecular weight: 81.11 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

2302

117

708

383.7

44.33

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.778 ± 0.806

1.781 ± 0.313

5.083 ± 0.25

9.296 ± 0.793

3.475 ± 0.497

4.083 ± 0.453

2.433 ± 0.284

7.081 ± 0.457

9.6 ± 0.516

9.513 ± 0.267

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.738 ± 0.282

5.039 ± 0.461

4.344 ± 0.313

4.561 ± 0.669

5.213 ± 0.476

7.515 ± 0.367

5.908 ± 0.117

3.736 ± 0.449

0.956 ± 0.119

3.866 ± 0.338
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski