Deinococcus irradiatisoli

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus

Average proteome isoelectric point is 6.71

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2903 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2Z3JFY9|A0A2Z3JFY9_9DEIO Carboxylic ester hydrolase OS=Deinococcus irradiatisoli OX=2202254 GN=DKM44_13425 PE=3 SV=1
MM1 pKa = 6.96NTPSEE6 pKa = 4.03LRR8 pKa = 11.84YY9 pKa = 10.14APSHH13 pKa = 5.94EE14 pKa = 4.17WLSDD18 pKa = 3.35DD19 pKa = 3.67GTVGISDD26 pKa = 4.46FAQDD30 pKa = 3.29QLGDD34 pKa = 3.68VVYY37 pKa = 11.21VEE39 pKa = 4.37LPEE42 pKa = 4.24VGRR45 pKa = 11.84EE46 pKa = 4.01VQAGEE51 pKa = 4.07TVAVVEE57 pKa = 4.56SVKK60 pKa = 10.0TASDD64 pKa = 3.45IYY66 pKa = 11.02APASGTITAVNEE78 pKa = 3.96ALAGSPEE85 pKa = 4.46LVNGDD90 pKa = 4.1CYY92 pKa = 11.57GEE94 pKa = 4.15GWLFKK99 pKa = 10.85LDD101 pKa = 3.56VTAEE105 pKa = 4.1SGDD108 pKa = 3.99LLDD111 pKa = 4.11AASYY115 pKa = 9.39EE116 pKa = 4.35AANSS120 pKa = 3.58

Molecular weight: 12.59 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2Z3JEN9|A0A2Z3JEN9_9DEIO Uncharacterized protein OS=Deinococcus irradiatisoli OX=2202254 GN=DKM44_09505 PE=4 SV=1
MM1 pKa = 7.51SAPHH5 pKa = 6.7LADD8 pKa = 3.14ATLRR12 pKa = 11.84AYY14 pKa = 10.48ALGDD18 pKa = 3.76LPLPAQQAAEE28 pKa = 4.15GHH30 pKa = 5.82VLGCPLCRR38 pKa = 11.84AQVIRR43 pKa = 11.84WRR45 pKa = 11.84DD46 pKa = 3.3DD47 pKa = 3.04FAAQVDD53 pKa = 4.2ALPSAGRR60 pKa = 11.84LPPLRR65 pKa = 11.84RR66 pKa = 11.84PHH68 pKa = 6.21GAPAKK73 pKa = 9.95RR74 pKa = 11.84HH75 pKa = 5.43LPPRR79 pKa = 11.84WSALTLPGLLMLSVLALGWGGWQQHH104 pKa = 4.94QASALRR110 pKa = 11.84AEE112 pKa = 4.39QRR114 pKa = 11.84QVAGWLAQPQLKK126 pKa = 9.38VLAMQDD132 pKa = 3.25TKK134 pKa = 10.92RR135 pKa = 11.84RR136 pKa = 11.84PTGQLLLLPSRR147 pKa = 11.84EE148 pKa = 4.09VLFVLPPPAPGKK160 pKa = 10.52VYY162 pKa = 9.6QVWVAAHH169 pKa = 5.47WHH171 pKa = 6.47RR172 pKa = 11.84GDD174 pKa = 3.73KK175 pKa = 9.21LTPQLSSRR183 pKa = 11.84RR184 pKa = 11.84GTFSASVGEE193 pKa = 3.91NDD195 pKa = 3.9YY196 pKa = 11.56VCVSLEE202 pKa = 3.97DD203 pKa = 4.18AGRR206 pKa = 11.84QPTKK210 pKa = 9.95PSRR213 pKa = 11.84ILGWSMVV220 pKa = 3.33

Molecular weight: 24.09 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2903

0

2903

896936

33

4079

309.0

33.39

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.258 ± 0.065

0.555 ± 0.013

4.887 ± 0.033

5.633 ± 0.05

3.189 ± 0.027

8.982 ± 0.041

2.082 ± 0.023

3.61 ± 0.038

2.849 ± 0.044

12.047 ± 0.074

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.84 ± 0.021

2.516 ± 0.031

5.697 ± 0.042

4.271 ± 0.039

6.941 ± 0.052

5.694 ± 0.039

5.495 ± 0.037

7.625 ± 0.031

1.389 ± 0.022

2.439 ± 0.024
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski