Gordonia phage Angelique

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae

Average proteome isoelectric point is 6.18

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 76 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A385DWD3|A0A385DWD3_9CAUD Membrane protein OS=Gordonia phage Angelique OX=2301691 GN=24 PE=4 SV=1
MM1 pKa = 6.88STTRR5 pKa = 11.84RR6 pKa = 11.84LLALGAAALFLVAGCSSDD24 pKa = 4.56DD25 pKa = 3.82GSSSSTTTAAATATTTATSTKK46 pKa = 9.61PRR48 pKa = 11.84PTLGQLNTPYY58 pKa = 10.84EE59 pKa = 4.12LTDD62 pKa = 3.47RR63 pKa = 11.84SGGDD67 pKa = 3.13QVKK70 pKa = 10.66YY71 pKa = 10.3SVTSIAVDD79 pKa = 4.18GQCPDD84 pKa = 2.77TYY86 pKa = 11.56YY87 pKa = 11.49NDD89 pKa = 3.56VEE91 pKa = 4.39NGHH94 pKa = 6.79LLVVGLDD101 pKa = 3.55VEE103 pKa = 5.15TGADD107 pKa = 3.33WDD109 pKa = 4.23PEE111 pKa = 4.19FGEE114 pKa = 4.28MFRR117 pKa = 11.84PRR119 pKa = 11.84GGYY122 pKa = 5.88WTIVGDD128 pKa = 3.96NGVTEE133 pKa = 4.25SGITSAASYY142 pKa = 10.86GCADD146 pKa = 3.57SQIPQTFDD154 pKa = 3.24PDD156 pKa = 3.09SRR158 pKa = 11.84YY159 pKa = 9.99QFSIAFDD166 pKa = 3.5TRR168 pKa = 11.84NASGMLQLRR177 pKa = 11.84VGEE180 pKa = 4.39STTRR184 pKa = 11.84WEE186 pKa = 4.28YY187 pKa = 11.54

Molecular weight: 19.93 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A385DTW5|A0A385DTW5_9CAUD Portal protein OS=Gordonia phage Angelique OX=2301691 GN=3 PE=4 SV=1
MM1 pKa = 7.71PKK3 pKa = 10.5GVFPRR8 pKa = 11.84CEE10 pKa = 3.74RR11 pKa = 11.84CGSRR15 pKa = 11.84VQQWTVRR22 pKa = 11.84VCARR26 pKa = 11.84CKK28 pKa = 9.84LARR31 pKa = 11.84NQKK34 pKa = 9.08EE35 pKa = 4.31VNQQ38 pKa = 3.88

Molecular weight: 4.46 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

76

0

76

16435

38

1874

216.3

23.54

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.658 ± 0.646

0.919 ± 0.143

7.082 ± 0.309

5.397 ± 0.246

2.805 ± 0.124

8.75 ± 0.472

2.02 ± 0.229

4.527 ± 0.19

3.261 ± 0.212

7.752 ± 0.22

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.057 ± 0.147

3.207 ± 0.24

5.543 ± 0.336

3.803 ± 0.487

7.441 ± 0.397

5.78 ± 0.233

6.644 ± 0.282

7.113 ± 0.324

2.075 ± 0.184

2.166 ± 0.176
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski