Phodopus sungorus papillomavirus 1

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Pipapillomavirus; Pipapillomavirus 1

Average proteome isoelectric point is 6.35

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|W8ZM63|W8ZM63_9PAPI Minor capsid protein L2 OS=Phodopus sungorus papillomavirus 1 OX=1487796 GN=L2 PE=3 SV=1
MM1 pKa = 6.93VAVNRR6 pKa = 11.84ARR8 pKa = 11.84RR9 pKa = 11.84TKK11 pKa = 10.33RR12 pKa = 11.84DD13 pKa = 3.37SASNLYY19 pKa = 9.65RR20 pKa = 11.84QCQVTGNCPPDD31 pKa = 3.52VVNKK35 pKa = 10.44IEE37 pKa = 4.09GTTLADD43 pKa = 3.4KK44 pKa = 10.55LSKK47 pKa = 10.35IFASILYY54 pKa = 10.19LGGLGIGTGRR64 pKa = 11.84GSGGATGYY72 pKa = 11.27GPINPGGGRR81 pKa = 11.84ITGTGTVMRR90 pKa = 11.84PGVVIDD96 pKa = 3.83PVGPNDD102 pKa = 4.26IITVGATDD110 pKa = 3.61SSIVPLLEE118 pKa = 4.09ATPDD122 pKa = 3.28IPIEE126 pKa = 4.48GGPEE130 pKa = 3.79VPPAGPDD137 pKa = 3.19VSTVDD142 pKa = 3.03VTANVDD148 pKa = 3.94PISEE152 pKa = 4.45VNVTTGSTITNPDD165 pKa = 3.21SAVIDD170 pKa = 3.93VQPAPSGPRR179 pKa = 11.84RR180 pKa = 11.84VTVSRR185 pKa = 11.84SEE187 pKa = 4.07FQNASYY193 pKa = 11.39VSVTHH198 pKa = 6.8PSQGLGEE205 pKa = 4.28SGGALVSADD214 pKa = 3.26SSGSFVSSGHH224 pKa = 5.83EE225 pKa = 3.76LDD227 pKa = 3.11IGIIIGEE234 pKa = 4.26RR235 pKa = 11.84PLGEE239 pKa = 4.35TNFEE243 pKa = 4.38AIEE246 pKa = 4.15LDD248 pKa = 4.01EE249 pKa = 4.52ILTTGGTAEE258 pKa = 3.92FDD260 pKa = 2.87IGEE263 pKa = 4.4GVNRR267 pKa = 11.84VGPSTSTPDD276 pKa = 3.27NYY278 pKa = 10.8LGRR281 pKa = 11.84ALSRR285 pKa = 11.84FRR287 pKa = 11.84EE288 pKa = 4.33IYY290 pKa = 10.21DD291 pKa = 3.79RR292 pKa = 11.84PRR294 pKa = 11.84DD295 pKa = 3.53LYY297 pKa = 10.87NRR299 pKa = 11.84RR300 pKa = 11.84VQQVRR305 pKa = 11.84VRR307 pKa = 11.84NRR309 pKa = 11.84DD310 pKa = 3.14QFLGAPGRR318 pKa = 11.84LVTYY322 pKa = 10.05EE323 pKa = 3.83FDD325 pKa = 3.55NPAFAGVEE333 pKa = 4.2DD334 pKa = 4.49EE335 pKa = 4.52VSLIFQQDD343 pKa = 3.57LNEE346 pKa = 4.2VQAAPDD352 pKa = 3.94TDD354 pKa = 3.78FMDD357 pKa = 5.11IIRR360 pKa = 11.84LGRR363 pKa = 11.84EE364 pKa = 4.31RR365 pKa = 11.84IAEE368 pKa = 4.21TADD371 pKa = 3.05GTVRR375 pKa = 11.84ISRR378 pKa = 11.84LGQRR382 pKa = 11.84GTIRR386 pKa = 11.84TRR388 pKa = 11.84SGLQIGGKK396 pKa = 6.93VHH398 pKa = 7.5FYY400 pKa = 10.96TDD402 pKa = 4.01LSPIATEE409 pKa = 4.24NIEE412 pKa = 4.3LSTLGEE418 pKa = 4.11VSGEE422 pKa = 4.14SMTIDD427 pKa = 3.39ALNEE431 pKa = 3.57YY432 pKa = 10.67SLISEE437 pKa = 4.41SGIEE441 pKa = 4.13PVPFPDD447 pKa = 3.98EE448 pKa = 4.79DD449 pKa = 3.96LLDD452 pKa = 3.61VHH454 pKa = 8.26SEE456 pKa = 4.04DD457 pKa = 4.2FSGSRR462 pKa = 11.84LHH464 pKa = 6.85IFRR467 pKa = 11.84GGNTRR472 pKa = 11.84FGVVYY477 pKa = 9.91EE478 pKa = 4.19PSEE481 pKa = 4.18SLGARR486 pKa = 11.84TIFPDD491 pKa = 3.08IDD493 pKa = 3.2TGDD496 pKa = 3.8FVRR499 pKa = 11.84YY500 pKa = 7.93PQTNVSPADD509 pKa = 3.26IPGRR513 pKa = 11.84DD514 pKa = 4.29LVPVDD519 pKa = 4.27PGTTHH524 pKa = 6.67IVGSEE529 pKa = 4.04FSSVDD534 pKa = 3.67YY535 pKa = 10.65YY536 pKa = 11.16LHH538 pKa = 6.68PSLRR542 pKa = 11.84RR543 pKa = 11.84RR544 pKa = 11.84KK545 pKa = 9.57RR546 pKa = 11.84KK547 pKa = 10.03RR548 pKa = 11.84NFHH551 pKa = 6.21

Molecular weight: 59.07 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A078BR99|A0A078BR99_9PAPI Protein E7 OS=Phodopus sungorus papillomavirus 1 OX=1487796 GN=E7 PE=3 SV=1
MM1 pKa = 7.24PTLTEE6 pKa = 4.35RR7 pKa = 11.84FDD9 pKa = 3.95AVQDD13 pKa = 3.86QILSLIEE20 pKa = 4.24RR21 pKa = 11.84GSTRR25 pKa = 11.84LADD28 pKa = 3.54HH29 pKa = 5.81VVYY32 pKa = 10.22WDD34 pKa = 3.66LVRR37 pKa = 11.84KK38 pKa = 9.95EE39 pKa = 4.86GVLQYY44 pKa = 9.69YY45 pKa = 10.49ARR47 pKa = 11.84RR48 pKa = 11.84QNMTRR53 pKa = 11.84LGLLPLPSQLGAEE66 pKa = 4.56HH67 pKa = 7.04KK68 pKa = 10.33AKK70 pKa = 10.5KK71 pKa = 9.45AIQMGLLLRR80 pKa = 11.84SLAEE84 pKa = 3.93SPFANEE90 pKa = 3.43TWTVTDD96 pKa = 3.4TSVEE100 pKa = 4.31VYY102 pKa = 10.14EE103 pKa = 4.13QTDD106 pKa = 3.54PEE108 pKa = 4.4KK109 pKa = 10.22TFKK112 pKa = 11.1KK113 pKa = 9.98NGQTIEE119 pKa = 3.73VWYY122 pKa = 10.42DD123 pKa = 3.19NDD125 pKa = 4.01PEE127 pKa = 4.25NSVAYY132 pKa = 7.8TLWRR136 pKa = 11.84YY137 pKa = 9.14IYY139 pKa = 10.41KK140 pKa = 9.86QDD142 pKa = 5.4EE143 pKa = 3.87NGQWHH148 pKa = 6.59KK149 pKa = 11.53LEE151 pKa = 4.26GRR153 pKa = 11.84VDD155 pKa = 3.72YY156 pKa = 11.32AGLYY160 pKa = 10.07YY161 pKa = 9.72IDD163 pKa = 4.19PSGMRR168 pKa = 11.84VYY170 pKa = 11.15YY171 pKa = 10.55EE172 pKa = 5.36DD173 pKa = 4.02FFEE176 pKa = 5.03DD177 pKa = 3.46ADD179 pKa = 4.53RR180 pKa = 11.84YY181 pKa = 9.45GHH183 pKa = 6.32SSTWTVKK190 pKa = 10.18GDD192 pKa = 3.51KK193 pKa = 10.39DD194 pKa = 3.02ISAPVTSSDD203 pKa = 3.47KK204 pKa = 10.44SWRR207 pKa = 11.84AQEE210 pKa = 4.18EE211 pKa = 4.22QPKK214 pKa = 8.78TKK216 pKa = 9.98RR217 pKa = 11.84RR218 pKa = 11.84RR219 pKa = 11.84DD220 pKa = 3.47NPTTSTPEE228 pKa = 3.14WDD230 pKa = 3.72YY231 pKa = 11.67PEE233 pKa = 4.53TSEE236 pKa = 5.17QEE238 pKa = 4.06EE239 pKa = 4.5RR240 pKa = 11.84PQTSTDD246 pKa = 3.05TPRR249 pKa = 11.84VKK251 pKa = 10.34RR252 pKa = 11.84QRR254 pKa = 11.84QADD257 pKa = 3.92SPSGRR262 pKa = 11.84RR263 pKa = 11.84GRR265 pKa = 11.84PWSEE269 pKa = 3.49STPRR273 pKa = 11.84NGRR276 pKa = 11.84GGRR279 pKa = 11.84EE280 pKa = 3.81QRR282 pKa = 11.84EE283 pKa = 4.21PSPDD287 pKa = 3.18TSPINGGGLSYY298 pKa = 10.95DD299 pKa = 3.86QIGSSHH305 pKa = 4.67TTVPRR310 pKa = 11.84RR311 pKa = 11.84GIGRR315 pKa = 11.84GQRR318 pKa = 11.84LLLEE322 pKa = 4.64ARR324 pKa = 11.84DD325 pKa = 3.92PPVILITGPANSLKK339 pKa = 10.12CWRR342 pKa = 11.84NRR344 pKa = 11.84VRR346 pKa = 11.84RR347 pKa = 11.84RR348 pKa = 11.84PVRR351 pKa = 11.84LFDD354 pKa = 5.45RR355 pKa = 11.84ISTCFSWVTEE365 pKa = 4.02GSGDD369 pKa = 3.5GAGTQRR375 pKa = 11.84LLIAFKK381 pKa = 11.02DD382 pKa = 3.55EE383 pKa = 4.2TQRR386 pKa = 11.84EE387 pKa = 4.5LFLKK391 pKa = 8.46TVPLPRR397 pKa = 11.84GSKK400 pKa = 9.77FFKK403 pKa = 10.94GNLDD407 pKa = 3.63GLL409 pKa = 4.27

Molecular weight: 46.91 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

2415

145

609

402.5

45.06

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.128 ± 0.786

1.988 ± 0.648

6.708 ± 0.373

6.087 ± 0.387

4.224 ± 0.48

7.122 ± 1.157

1.449 ± 0.101

4.679 ± 0.86

4.596 ± 0.875

8.737 ± 0.765

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.781 ± 0.411

3.892 ± 0.605

6.377 ± 0.784

4.555 ± 0.58

7.039 ± 0.79

7.329 ± 0.96

6.211 ± 0.578

6.708 ± 0.632

1.284 ± 0.408

3.106 ± 0.223
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski