Yersinia phage vB_YenP_AP10

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Apdecimavirus; Yersinia virus AP10

Average proteome isoelectric point is 6.55

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 47 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0P0LM15|A0A0P0LM15_9CAUD DNA ligase OS=Yersinia phage vB_YenP_AP10 OX=1735591 PE=4 SV=1
MM1 pKa = 7.48AMSNMTYY8 pKa = 11.1SNVFDD13 pKa = 4.46HH14 pKa = 7.18AYY16 pKa = 10.58EE17 pKa = 3.9MLNEE21 pKa = 4.3NIRR24 pKa = 11.84YY25 pKa = 9.79DD26 pKa = 5.05DD27 pKa = 3.94IRR29 pKa = 11.84DD30 pKa = 3.59TDD32 pKa = 3.81GLGDD36 pKa = 5.34AIHH39 pKa = 6.6EE40 pKa = 4.6AADD43 pKa = 3.63SAVPHH48 pKa = 6.4YY49 pKa = 10.5YY50 pKa = 10.65SDD52 pKa = 3.44IFSVMASEE60 pKa = 5.55GIDD63 pKa = 4.5LEE65 pKa = 4.76FEE67 pKa = 4.73DD68 pKa = 5.02SGLMPDD74 pKa = 3.85TKK76 pKa = 10.88DD77 pKa = 3.22VTSILQARR85 pKa = 11.84IYY87 pKa = 9.82EE88 pKa = 4.14QLTIDD93 pKa = 3.75LWEE96 pKa = 4.32KK97 pKa = 11.36AEE99 pKa = 4.51DD100 pKa = 3.81LLNEE104 pKa = 3.99YY105 pKa = 10.52LEE107 pKa = 4.29EE108 pKa = 4.22VEE110 pKa = 4.4EE111 pKa = 4.3EE112 pKa = 4.13EE113 pKa = 4.71EE114 pKa = 3.94EE115 pKa = 4.52RR116 pKa = 11.84EE117 pKa = 4.0EE118 pKa = 5.36DD119 pKa = 3.8EE120 pKa = 4.49EE121 pKa = 4.39

Molecular weight: 14.06 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0N7J838|A0A0N7J838_9CAUD Host RNA polymerase inhibitor OS=Yersinia phage vB_YenP_AP10 OX=1735591 PE=4 SV=1
MM1 pKa = 6.6VTLFVITMYY10 pKa = 11.41ALIGAYY16 pKa = 9.83FMRR19 pKa = 11.84DD20 pKa = 3.55FKK22 pKa = 10.98RR23 pKa = 11.84GLMHH27 pKa = 7.18HH28 pKa = 7.01KK29 pKa = 9.7ATLSHH34 pKa = 6.88FKK36 pKa = 10.87YY37 pKa = 10.57GFIPRR42 pKa = 11.84FTARR46 pKa = 11.84EE47 pKa = 3.63PNGRR51 pKa = 11.84FKK53 pKa = 11.26ANKK56 pKa = 9.56VGIFYY61 pKa = 10.48IATHH65 pKa = 6.18

Molecular weight: 7.63 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

47

0

47

11798

37

1325

251.0

27.98

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.408 ± 0.46

0.856 ± 0.184

6.442 ± 0.282

7.052 ± 0.375

3.772 ± 0.186

7.815 ± 0.357

1.873 ± 0.216

4.992 ± 0.188

6.577 ± 0.353

8.027 ± 0.264

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.89 ± 0.187

4.391 ± 0.32

3.645 ± 0.215

4.145 ± 0.369

5.518 ± 0.229

5.874 ± 0.332

5.238 ± 0.208

6.586 ± 0.369

1.517 ± 0.201

3.382 ± 0.195
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski