Chaetoceros protobacilladnavirus 1

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Baphyvirales; Bacilladnaviridae; Protobacilladnavirus

Average proteome isoelectric point is 7.08

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q2L6L9|Q2L6L9_9VIRU Uncharacterized protein OS=Chaetoceros protobacilladnavirus 1 OX=2170140 PE=4 SV=1
MM1 pKa = 7.71RR2 pKa = 11.84NFEE5 pKa = 4.72RR6 pKa = 11.84IMNQVEE12 pKa = 4.33DD13 pKa = 3.81EE14 pKa = 4.57HH15 pKa = 7.58NLPNHH20 pKa = 6.28VYY22 pKa = 10.88ANLMDD27 pKa = 5.77DD28 pKa = 4.21SPACIATMASDD39 pKa = 3.93RR40 pKa = 11.84QWAGAEE46 pKa = 4.06LKK48 pKa = 10.5EE49 pKa = 4.42IAGKK53 pKa = 10.12HH54 pKa = 4.48YY55 pKa = 10.1FYY57 pKa = 11.33AFNTYY62 pKa = 10.65YY63 pKa = 10.83DD64 pKa = 3.61IDD66 pKa = 3.75QLTNRR71 pKa = 11.84AEE73 pKa = 4.32RR74 pKa = 11.84YY75 pKa = 9.39FLEE78 pKa = 4.44QKK80 pKa = 6.94WTLMMYY86 pKa = 10.64NEE88 pKa = 4.2FTMYY92 pKa = 9.94MDD94 pKa = 4.65MLICGYY100 pKa = 10.09KK101 pKa = 10.28FNPHH105 pKa = 4.5YY106 pKa = 8.97TAKK109 pKa = 10.72LFWAPTLQRR118 pKa = 11.84CVDD121 pKa = 3.7APIIDD126 pKa = 3.03IWYY129 pKa = 8.85QFIYY133 pKa = 9.51PDD135 pKa = 3.52EE136 pKa = 4.01VHH138 pKa = 6.18YY139 pKa = 11.31VIDD142 pKa = 3.85LTSDD146 pKa = 3.36DD147 pKa = 4.28GADD150 pKa = 3.35VPFDD154 pKa = 3.69TDD156 pKa = 3.9SIATFDD162 pKa = 3.63VVGPIDD168 pKa = 4.94NDD170 pKa = 3.44ILDD173 pKa = 3.78VWTTPTVPAIIDD185 pKa = 3.72VPNLRR190 pKa = 11.84IDD192 pKa = 3.66LRR194 pKa = 11.84DD195 pKa = 3.12GHH197 pKa = 6.49EE198 pKa = 5.03IIDD201 pKa = 4.01LTNDD205 pKa = 3.6IISS208 pKa = 3.49

Molecular weight: 24.32 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q2L6L7|Q2L6L7_9VIRU Uncharacterized protein OS=Chaetoceros protobacilladnavirus 1 OX=2170140 PE=4 SV=1
MM1 pKa = 7.75RR2 pKa = 11.84AITPKK7 pKa = 10.34SSYY10 pKa = 10.99APAVGVKK17 pKa = 8.62NTMQGAVPLTQEE29 pKa = 4.54EE30 pKa = 4.68PSPMLSSSTVPVVLVRR46 pKa = 11.84PRR48 pKa = 11.84LPTIGTPVRR57 pKa = 11.84VKK59 pKa = 9.89PRR61 pKa = 11.84KK62 pKa = 8.88SAIIVEE68 pKa = 4.54TLTMAISGEE77 pKa = 4.12LADD80 pKa = 5.07RR81 pKa = 11.84PTMGKK86 pKa = 10.17GLSTSRR92 pKa = 11.84NLQAKK97 pKa = 9.83RR98 pKa = 11.84PLADD102 pKa = 3.0

Molecular weight: 10.82 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

1799

102

573

299.8

33.7

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.115 ± 0.837

1.334 ± 0.489

6.448 ± 1.024

5.392 ± 0.57

4.169 ± 0.551

7.449 ± 0.797

2.446 ± 0.656

5.725 ± 0.658

5.67 ± 0.902

7.059 ± 0.588

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.223 ± 0.677

4.558 ± 0.649

5.892 ± 0.753

3.835 ± 0.432

6.392 ± 0.439

6.559 ± 0.804

6.893 ± 0.783

5.503 ± 0.95

2.001 ± 0.502

3.335 ± 0.709
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski