Flavihumibacter soli

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Chitinophagia; Chitinophagales; Chitinophagaceae; Flavihumibacter

Average proteome isoelectric point is 6.63

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3820 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A6B3PFP5|A0A6B3PFP5_9BACT FadR family transcriptional regulator OS=Flavihumibacter soli OX=2705549 GN=GZH53_01795 PE=4 SV=1
MM1 pKa = 7.58KK2 pKa = 10.21SQYY5 pKa = 9.86PLLSASCLYY14 pKa = 10.22TEE16 pKa = 4.63PLDD19 pKa = 3.85YY20 pKa = 11.38LEE22 pKa = 4.66NFCGIRR28 pKa = 11.84QVTKK32 pKa = 10.76EE33 pKa = 3.68FVQFLKK39 pKa = 10.89SEE41 pKa = 4.06SGKK44 pKa = 10.56IMEE47 pKa = 5.18EE48 pKa = 4.26DD49 pKa = 3.62SDD51 pKa = 5.19DD52 pKa = 4.43AGQALNTEE60 pKa = 4.59EE61 pKa = 4.7GDD63 pKa = 3.64NPASFFYY70 pKa = 9.88TQTFTPSSEE79 pKa = 4.19DD80 pKa = 3.12

Molecular weight: 9.03 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A6B3PW20|A0A6B3PW20_9BACT Uncharacterized protein OS=Flavihumibacter soli OX=2705549 GN=GZH53_14950 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.54RR3 pKa = 11.84TFQPSQRR10 pKa = 11.84KK11 pKa = 8.72RR12 pKa = 11.84RR13 pKa = 11.84NKK15 pKa = 9.3HH16 pKa = 3.93GFRR19 pKa = 11.84EE20 pKa = 4.26RR21 pKa = 11.84MSSANGRR28 pKa = 11.84RR29 pKa = 11.84VLASRR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.31GRR39 pKa = 11.84KK40 pKa = 8.36RR41 pKa = 11.84VSVSDD46 pKa = 3.68VRR48 pKa = 11.84RR49 pKa = 11.84HH50 pKa = 5.0KK51 pKa = 10.94AA52 pKa = 2.9

Molecular weight: 6.22 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3820

0

3820

1307137

38

3478

342.2

38.33

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.281 ± 0.04

0.752 ± 0.012

5.393 ± 0.026

6.049 ± 0.04

4.964 ± 0.031

6.961 ± 0.034

1.819 ± 0.019

7.288 ± 0.037

6.616 ± 0.039

9.602 ± 0.042

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.251 ± 0.021

5.39 ± 0.04

3.916 ± 0.023

3.527 ± 0.02

4.365 ± 0.028

6.867 ± 0.038

5.553 ± 0.042

6.387 ± 0.03

1.146 ± 0.015

3.872 ± 0.026
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski