Aeromicrobium sp. 592

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Propionibacteriales; Nocardioidaceae; Aeromicrobium

Average proteome isoelectric point is 5.98

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3511 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2S0WRQ6|A0A2S0WRQ6_9ACTN Deoxyribodipyrimidine photolyase OS=Aeromicrobium sp. 592 OX=2079793 GN=C3E78_03485 PE=3 SV=1
MM1 pKa = 6.96TTTDD5 pKa = 3.4TYY7 pKa = 11.12RR8 pKa = 11.84VTGMTCEE15 pKa = 4.03HH16 pKa = 6.71CVAAVTEE23 pKa = 4.35EE24 pKa = 4.43LSALDD29 pKa = 4.47DD30 pKa = 3.97VTSVAVDD37 pKa = 3.78LVPGGTSTVTVEE49 pKa = 4.34SSAPLDD55 pKa = 3.71PATVAEE61 pKa = 4.58AVDD64 pKa = 3.51EE65 pKa = 4.59AGYY68 pKa = 11.28ALAGPRR74 pKa = 11.84DD75 pKa = 3.75LPLAA79 pKa = 4.34

Molecular weight: 8.0 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2S0WJE5|A0A2S0WJE5_9ACTN Uncharacterized protein OS=Aeromicrobium sp. 592 OX=2079793 GN=C3E78_03805 PE=4 SV=1
MM1 pKa = 6.58TTPPRR6 pKa = 11.84TSPSRR11 pKa = 11.84RR12 pKa = 11.84PAHH15 pKa = 5.96SAASSRR21 pKa = 11.84SRR23 pKa = 11.84SPRR26 pKa = 11.84PHH28 pKa = 6.29LRR30 pKa = 11.84PRR32 pKa = 11.84LRR34 pKa = 11.84GRR36 pKa = 11.84PPTRR40 pKa = 11.84RR41 pKa = 11.84PPRR44 pKa = 11.84LQPPRR49 pKa = 11.84LRR51 pKa = 11.84PPRR54 pKa = 11.84LHH56 pKa = 6.4RR57 pKa = 11.84PRR59 pKa = 11.84RR60 pKa = 11.84RR61 pKa = 11.84RR62 pKa = 11.84PSAPSTDD69 pKa = 3.71RR70 pKa = 11.84PPGSPHH76 pKa = 6.37AAAVAPSS83 pKa = 3.21

Molecular weight: 9.32 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3511

0

3511

1133916

29

3019

323.0

34.64

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.648 ± 0.059

0.636 ± 0.01

6.6 ± 0.033

5.569 ± 0.044

2.927 ± 0.022

9.012 ± 0.039

2.162 ± 0.023

4.122 ± 0.03

2.352 ± 0.035

10.032 ± 0.043

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.933 ± 0.017

1.851 ± 0.021

5.287 ± 0.028

2.834 ± 0.02

7.345 ± 0.041

5.663 ± 0.033

6.249 ± 0.037

9.368 ± 0.037

1.435 ± 0.017

1.976 ± 0.02
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski