Arenimonas oryziterrae DSM 21050 = YC6267

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas; Arenimonas oryziterrae

Average proteome isoelectric point is 6.65

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2897 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A091B9K3|A0A091B9K3_9GAMM Signal peptidase I OS=Arenimonas oryziterrae DSM 21050 = YC6267 OX=1121015 GN=N789_04415 PE=3 SV=1
MM1 pKa = 7.27SADD4 pKa = 4.11PRR6 pKa = 11.84PLPPPPPDD14 pKa = 4.03PADD17 pKa = 3.8CCGSGCVRR25 pKa = 11.84CIFDD29 pKa = 5.19LYY31 pKa = 11.35DD32 pKa = 4.25DD33 pKa = 4.17ALARR37 pKa = 11.84YY38 pKa = 7.74DD39 pKa = 3.53AQLAQWLTRR48 pKa = 11.84HH49 pKa = 6.56PDD51 pKa = 2.99AAADD55 pKa = 3.96ADD57 pKa = 4.21SMPP60 pKa = 4.17

Molecular weight: 6.46 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A091AUP7|A0A091AUP7_9GAMM 3-ketoacyl-ACP reductase OS=Arenimonas oryziterrae DSM 21050 = YC6267 OX=1121015 GN=fabG PE=4 SV=1
MM1 pKa = 7.6RR2 pKa = 11.84PVDD5 pKa = 3.69AGAGNGMRR13 pKa = 11.84EE14 pKa = 4.0RR15 pKa = 11.84LNYY18 pKa = 8.72AWRR21 pKa = 11.84VIATGLSFLSFGIGGVILWLLVFPLLSLLVRR52 pKa = 11.84DD53 pKa = 4.67LEE55 pKa = 4.4VRR57 pKa = 11.84SQKK60 pKa = 10.4ARR62 pKa = 11.84AIIHH66 pKa = 6.47RR67 pKa = 11.84SFALFIGFMHH77 pKa = 7.0RR78 pKa = 11.84MGVLTYY84 pKa = 8.79EE85 pKa = 3.62IRR87 pKa = 11.84GAEE90 pKa = 3.8RR91 pKa = 11.84LEE93 pKa = 3.88RR94 pKa = 11.84RR95 pKa = 11.84GLLVLANHH103 pKa = 6.75PTLIDD108 pKa = 3.52VVFLVSLIPNADD120 pKa = 3.56CVVKK124 pKa = 10.75SRR126 pKa = 11.84LATNPFTRR134 pKa = 11.84GPVRR138 pKa = 11.84ATRR141 pKa = 11.84YY142 pKa = 8.86ICNDD146 pKa = 2.82NGAGLIEE153 pKa = 4.63DD154 pKa = 5.51CIASLRR160 pKa = 11.84SGKK163 pKa = 9.65NLIIFPEE170 pKa = 4.75GTRR173 pKa = 11.84TPRR176 pKa = 11.84TGPATLQRR184 pKa = 11.84GAANIAVRR192 pKa = 11.84GLRR195 pKa = 11.84DD196 pKa = 3.38ITPVIIRR203 pKa = 11.84CSPPTLSKK211 pKa = 10.64GEE213 pKa = 3.52KK214 pKa = 8.27WYY216 pKa = 10.4RR217 pKa = 11.84VPSRR221 pKa = 11.84RR222 pKa = 11.84FHH224 pKa = 7.04VSIEE228 pKa = 3.96VRR230 pKa = 11.84EE231 pKa = 4.22DD232 pKa = 3.18MPVAPFLAGTSEE244 pKa = 3.89AQAARR249 pKa = 11.84KK250 pKa = 8.06LTEE253 pKa = 3.92HH254 pKa = 5.86LTGYY258 pKa = 10.61FDD260 pKa = 4.58LEE262 pKa = 4.12RR263 pKa = 11.84PIASAA268 pKa = 3.9

Molecular weight: 29.66 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2897

0

2897

942598

29

2206

325.4

35.42

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.663 ± 0.061

0.863 ± 0.015

5.75 ± 0.035

5.421 ± 0.038

3.614 ± 0.032

8.289 ± 0.044

2.17 ± 0.023

4.459 ± 0.027

3.079 ± 0.037

11.033 ± 0.066

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.198 ± 0.02

2.592 ± 0.032

5.287 ± 0.036

3.583 ± 0.025

7.39 ± 0.046

5.274 ± 0.03

5.127 ± 0.043

7.351 ± 0.036

1.491 ± 0.019

2.367 ± 0.025
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski