Stenotrophomonas chelatiphaga

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas

Average proteome isoelectric point is 6.57

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3376 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0R0CU18|A0A0R0CU18_9GAMM LuxR family transcriptional regulator OS=Stenotrophomonas chelatiphaga OX=517011 GN=ABB28_10860 PE=4 SV=1
MM1 pKa = 7.21ATEE4 pKa = 4.85CIEE7 pKa = 3.9GRR9 pKa = 11.84HH10 pKa = 5.51FEE12 pKa = 4.53GEE14 pKa = 4.31HH15 pKa = 6.25PMSDD19 pKa = 3.21TPPAVFRR26 pKa = 11.84TWMCVVCGFLYY37 pKa = 10.75HH38 pKa = 6.74EE39 pKa = 5.09ADD41 pKa = 3.65GLPEE45 pKa = 4.0EE46 pKa = 5.59GIAAGTRR53 pKa = 11.84WEE55 pKa = 4.73DD56 pKa = 4.32VPDD59 pKa = 3.14TWTCPDD65 pKa = 3.91CGVTKK70 pKa = 10.7DD71 pKa = 3.65DD72 pKa = 4.21FEE74 pKa = 4.39MVEE77 pKa = 4.23LDD79 pKa = 3.29

Molecular weight: 8.88 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0R0D4G3|A0A0R0D4G3_9GAMM Membrane protein OS=Stenotrophomonas chelatiphaga OX=517011 GN=ABB28_13950 PE=4 SV=1
MM1 pKa = 7.51RR2 pKa = 11.84QLSLADD8 pKa = 3.7RR9 pKa = 11.84GQTISLDD16 pKa = 3.66KK17 pKa = 11.3SPDD20 pKa = 3.53DD21 pKa = 3.82ATPICLSVARR31 pKa = 11.84LGSLQTAGSCFTVWIQVRR49 pKa = 11.84GSAWVEE55 pKa = 3.64AKK57 pKa = 10.12EE58 pKa = 4.14GRR60 pKa = 11.84FRR62 pKa = 11.84MRR64 pKa = 11.84RR65 pKa = 11.84GEE67 pKa = 3.87WIAFEE72 pKa = 4.34KK73 pKa = 10.51EE74 pKa = 3.93SRR76 pKa = 11.84PLVQAGRR83 pKa = 11.84SGLCIGLALNADD95 pKa = 4.2AMRR98 pKa = 11.84MLMEE102 pKa = 5.06LADD105 pKa = 4.17CGLYY109 pKa = 10.38AGRR112 pKa = 11.84GLMKK116 pKa = 10.28QAEE119 pKa = 4.41LRR121 pKa = 11.84VALRR125 pKa = 11.84LWRR128 pKa = 11.84DD129 pKa = 3.32ALDD132 pKa = 3.8SGLPAQALRR141 pKa = 11.84PMLLHH146 pKa = 6.77LASLQRR152 pKa = 11.84TMAGTVQRR160 pKa = 11.84CPGRR164 pKa = 11.84SRR166 pKa = 11.84SRR168 pKa = 11.84KK169 pKa = 7.5RR170 pKa = 11.84QVFGRR175 pKa = 11.84MQRR178 pKa = 11.84ARR180 pKa = 11.84LYY182 pKa = 11.22LEE184 pKa = 4.89GNSHH188 pKa = 5.53RR189 pKa = 11.84VVRR192 pKa = 11.84IGEE195 pKa = 4.15LAEE198 pKa = 4.01LTNFSSWYY206 pKa = 9.37LSKK209 pKa = 9.81TFQSLYY215 pKa = 10.41EE216 pKa = 4.23EE217 pKa = 4.85SPQALSARR225 pKa = 11.84LRR227 pKa = 11.84LEE229 pKa = 3.77RR230 pKa = 11.84AADD233 pKa = 3.99LLRR236 pKa = 11.84DD237 pKa = 3.51TDD239 pKa = 3.69MMIGEE244 pKa = 4.45VASASGFDD252 pKa = 3.65NCCSFARR259 pKa = 11.84AFRR262 pKa = 11.84ARR264 pKa = 11.84FGTSASHH271 pKa = 5.57YY272 pKa = 9.39RR273 pKa = 11.84EE274 pKa = 4.19SAAKK278 pKa = 10.43LSPHH282 pKa = 5.57SAKK285 pKa = 10.62SLAASRR291 pKa = 11.84KK292 pKa = 8.94PRR294 pKa = 11.84IATQSS299 pKa = 3.03

Molecular weight: 33.22 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3376

0

3376

1140280

29

5071

337.8

36.56

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.109 ± 0.067

0.765 ± 0.013

5.834 ± 0.031

5.033 ± 0.04

3.297 ± 0.026

8.691 ± 0.046

2.205 ± 0.025

4.035 ± 0.031

2.562 ± 0.033

11.039 ± 0.059

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.185 ± 0.02

2.576 ± 0.038

5.286 ± 0.034

4.325 ± 0.033

7.329 ± 0.055

5.417 ± 0.037

4.943 ± 0.041

7.596 ± 0.043

1.539 ± 0.024

2.233 ± 0.023
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski