Ochrobactrum gallinifaecis

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Hyphomicrobiales; Brucellaceae; Brucella/Ochrobactrum group; Brucella

Average proteome isoelectric point is 6.53

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3370 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A502BSM1|A0A502BSM1_9RHIZ ABC transporter ATP-binding protein OS=Ochrobactrum gallinifaecis OX=215590 GN=FHY56_00275 PE=3 SV=1
MM1 pKa = 7.32KK2 pKa = 10.21KK3 pKa = 8.94WVLSAGFSLVASAALAGEE21 pKa = 4.24ISIPLPDD28 pKa = 4.84DD29 pKa = 3.65VDD31 pKa = 3.78VTEE34 pKa = 4.65NSVLYY39 pKa = 10.61KK40 pKa = 10.9CGDD43 pKa = 3.58QNISATYY50 pKa = 9.87YY51 pKa = 10.43NAGEE55 pKa = 4.01NALVQLEE62 pKa = 4.5MEE64 pKa = 5.21DD65 pKa = 3.54NTVIAANVLAGSGARR80 pKa = 11.84YY81 pKa = 9.96AGGIYY86 pKa = 9.75IWWTKK91 pKa = 10.68GDD93 pKa = 3.63TADD96 pKa = 5.21LYY98 pKa = 11.87NLMDD102 pKa = 5.14DD103 pKa = 4.71PEE105 pKa = 4.2QEE107 pKa = 4.28KK108 pKa = 10.5PISCKK113 pKa = 10.63EE114 pKa = 3.82EE115 pKa = 3.77

Molecular weight: 12.42 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A502BUA7|A0A502BUA7_9RHIZ Pyridoxamine 5'-phosphate oxidase family protein OS=Ochrobactrum gallinifaecis OX=215590 GN=FHY56_04080 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.61RR3 pKa = 11.84TFQPSNLVRR12 pKa = 11.84KK13 pKa = 9.18RR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.42GFRR19 pKa = 11.84ARR21 pKa = 11.84MATAGGRR28 pKa = 11.84KK29 pKa = 8.88VLAARR34 pKa = 11.84RR35 pKa = 11.84ARR37 pKa = 11.84GRR39 pKa = 11.84KK40 pKa = 9.03RR41 pKa = 11.84LSAA44 pKa = 4.03

Molecular weight: 5.08 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3370

0

3370

1063554

17

4228

315.6

34.52

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.926 ± 0.051

0.774 ± 0.012

5.633 ± 0.036

5.849 ± 0.046

3.967 ± 0.028

8.113 ± 0.085

2.024 ± 0.018

6.379 ± 0.031

4.333 ± 0.034

9.811 ± 0.047

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.56 ± 0.023

3.407 ± 0.031

4.573 ± 0.033

3.374 ± 0.021

6.195 ± 0.046

6.06 ± 0.039

5.265 ± 0.034

7.071 ± 0.038

1.227 ± 0.015

2.459 ± 0.021
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski