Cyberlindnera jadinii (strain ATCC 18201 / CBS 1600 / BCRC 20928 / JCM 3617 / NBRC 0987 / NRRL Y-1542) (Torula yeast) (Candida utilis)

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Saccharomycotina; Saccharomycetes; Saccharomycetales; Phaffomycetaceae; Cyberlindnera; Cyberlindnera jadinii

Average proteome isoelectric point is 6.28

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5994 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1E4S1F9|A0A1E4S1F9_CYBJN Asparagine synthase (glutamine-hydrolyzing) OS=Cyberlindnera jadinii (strain ATCC 18201 / CBS 1600 / BCRC 20928 / JCM 3617 / NBRC 0987 / NRRL Y-1542) OX=983966 GN=CYBJADRAFT_173338 PE=4 SV=1
MM1 pKa = 7.84KK2 pKa = 10.5LLQLLASTLCATSLAIADD20 pKa = 3.83IAPMKK25 pKa = 10.45FDD27 pKa = 3.66ILRR30 pKa = 11.84GTDD33 pKa = 3.04MSSAKK38 pKa = 10.04KK39 pKa = 10.17KK40 pKa = 10.0PRR42 pKa = 11.84LLKK45 pKa = 10.14RR46 pKa = 11.84DD47 pKa = 3.22AGDD50 pKa = 3.19IVFSDD55 pKa = 3.21VLYY58 pKa = 10.42QEE60 pKa = 4.43KK61 pKa = 10.53SFYY64 pKa = 10.14SANITIAGTEE74 pKa = 4.14FQVQLDD80 pKa = 4.08TGSSDD85 pKa = 2.84LWVYY89 pKa = 10.63GADD92 pKa = 4.04NPFCASNGGVVVNHH106 pKa = 7.12IDD108 pKa = 3.33QSSTVVTPAEE118 pKa = 3.91ATLDD122 pKa = 3.74CEE124 pKa = 4.55AYY126 pKa = 10.54GIFDD130 pKa = 3.83IDD132 pKa = 3.75NEE134 pKa = 4.33DD135 pKa = 4.72FVTEE139 pKa = 4.14DD140 pKa = 3.08QLLFADD146 pKa = 4.24YY147 pKa = 11.02GDD149 pKa = 3.82GSFAVGVYY157 pKa = 10.13GRR159 pKa = 11.84STVSFGNATLEE170 pKa = 3.94GFMFGVANLSNSSVPVCGLSFEE192 pKa = 4.37VSEE195 pKa = 4.8FSLDD199 pKa = 3.57PEE201 pKa = 4.5MSTDD205 pKa = 3.45SPGGSFMYY213 pKa = 10.56QNLPSAMKK221 pKa = 8.69QTGLIKK227 pKa = 9.91RR228 pKa = 11.84TAFSLWIDD236 pKa = 3.88GEE238 pKa = 4.27SSEE241 pKa = 5.33GYY243 pKa = 10.1ILFGAIDD250 pKa = 3.46HH251 pKa = 6.46SKK253 pKa = 10.97YY254 pKa = 10.57SGEE257 pKa = 4.32LVTLPLLITDD267 pKa = 4.53NSSQPNAYY275 pKa = 9.1QVSLNTVILSDD286 pKa = 3.86GDD288 pKa = 4.08SEE290 pKa = 4.65VDD292 pKa = 3.43VMVNEE297 pKa = 4.29TSVLLDD303 pKa = 3.39SGTSEE308 pKa = 5.17AYY310 pKa = 10.47LPNDD314 pKa = 3.16AVEE317 pKa = 4.79NMAEE321 pKa = 4.03ALSAKK326 pKa = 10.41YY327 pKa = 10.5SDD329 pKa = 4.17DD330 pKa = 3.13QGTYY334 pKa = 10.9VLDD337 pKa = 4.1CPKK340 pKa = 10.42EE341 pKa = 4.18STNITITFTFDD352 pKa = 3.98GIDD355 pKa = 3.1IQIPLEE361 pKa = 4.33SFLSATDD368 pKa = 3.63SSGEE372 pKa = 3.85KK373 pKa = 9.19CALMIYY379 pKa = 10.12PGGGNNILGDD389 pKa = 3.64VFLQNVYY396 pKa = 9.97VVFDD400 pKa = 3.55QDD402 pKa = 3.25GLQARR407 pKa = 11.84IAPVDD412 pKa = 3.87NNNDD416 pKa = 3.52SADD419 pKa = 3.56IEE421 pKa = 4.29ILDD424 pKa = 4.06SVKK427 pKa = 10.19TPSGGYY433 pKa = 9.92NNEE436 pKa = 4.06TLTATASWDD445 pKa = 3.32GTLATTEE452 pKa = 4.15DD453 pKa = 3.46QAITKK458 pKa = 9.96SLSSYY463 pKa = 10.45LSSDD467 pKa = 3.51YY468 pKa = 11.32GLSTSEE474 pKa = 4.45SATASS479 pKa = 3.37

Molecular weight: 51.16 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1E4RWW1|A0A1E4RWW1_CYBJN Zn(2)-C6 fungal-type domain-containing protein OS=Cyberlindnera jadinii (strain ATCC 18201 / CBS 1600 / BCRC 20928 / JCM 3617 / NBRC 0987 / NRRL Y-1542) OX=983966 GN=CYBJADRAFT_164065 PE=4 SV=1
MM1 pKa = 7.94PSQKK5 pKa = 10.34SFKK8 pKa = 9.84TKK10 pKa = 10.18QKK12 pKa = 9.8LAKK15 pKa = 9.58AQRR18 pKa = 11.84TNRR21 pKa = 11.84PLPQWIRR28 pKa = 11.84LRR30 pKa = 11.84TNNTVRR36 pKa = 11.84YY37 pKa = 7.2NAKK40 pKa = 8.87RR41 pKa = 11.84RR42 pKa = 11.84HH43 pKa = 4.11WRR45 pKa = 11.84RR46 pKa = 11.84TKK48 pKa = 11.12LNII51 pKa = 3.83

Molecular weight: 6.32 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5994

0

5994

2597173

50

4911

433.3

48.74

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.18 ± 0.031

1.205 ± 0.011

6.115 ± 0.022

6.736 ± 0.026

4.369 ± 0.022

5.588 ± 0.03

2.209 ± 0.014

5.961 ± 0.022

6.577 ± 0.032

9.741 ± 0.036

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.015 ± 0.013

4.66 ± 0.018

4.382 ± 0.027

4.167 ± 0.03

4.628 ± 0.022

8.473 ± 0.036

5.928 ± 0.03

6.614 ± 0.021

1.132 ± 0.011

3.319 ± 0.017
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski