Leptonychotes weddellii papillomavirus 3

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; unclassified Papillomaviridae; non-primate mammal papillomaviruses

Average proteome isoelectric point is 6.52

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2I8B2P6|A0A2I8B2P6_9PAPI Replication protein E1 OS=Leptonychotes weddellii papillomavirus 3 OX=2077304 GN=E1 PE=3 SV=1
MM1 pKa = 7.61IGTEE5 pKa = 4.13PTLKK9 pKa = 10.68DD10 pKa = 3.16IVLGEE15 pKa = 4.18QPVPADD21 pKa = 4.33DD22 pKa = 3.97LWCYY26 pKa = 10.94EE27 pKa = 4.08EE28 pKa = 5.38LPPEE32 pKa = 3.94EE33 pKa = 5.1AEE35 pKa = 4.89RR36 pKa = 11.84SDD38 pKa = 3.35QAPYY42 pKa = 9.93RR43 pKa = 11.84VHH45 pKa = 7.17ASCGFCGRR53 pKa = 11.84GIEE56 pKa = 4.26LVVLSSRR63 pKa = 11.84VAIRR67 pKa = 11.84TLQHH71 pKa = 6.84LLLEE75 pKa = 4.71NLDD78 pKa = 4.11IVCPDD83 pKa = 3.84CARR86 pKa = 11.84TRR88 pKa = 11.84ALHH91 pKa = 6.35HH92 pKa = 6.63GGG94 pKa = 3.46

Molecular weight: 10.39 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2I8B2Q2|A0A2I8B2Q2_9PAPI Minor capsid protein L2 OS=Leptonychotes weddellii papillomavirus 3 OX=2077304 GN=L2 PE=3 SV=1
MM1 pKa = 7.41VEE3 pKa = 3.97NLAKK7 pKa = 10.65RR8 pKa = 11.84LDD10 pKa = 3.75LVRR13 pKa = 11.84DD14 pKa = 3.82GLLDD18 pKa = 4.06LYY20 pKa = 10.2EE21 pKa = 4.86RR22 pKa = 11.84CDD24 pKa = 4.53DD25 pKa = 4.02SLEE28 pKa = 4.23SQLKK32 pKa = 8.81HH33 pKa = 4.91WQLLRR38 pKa = 11.84QEE40 pKa = 4.05YY41 pKa = 10.43AILYY45 pKa = 6.48FARR48 pKa = 11.84RR49 pKa = 11.84SGIIRR54 pKa = 11.84VGCQPVPPAQVSRR67 pKa = 11.84EE68 pKa = 3.86RR69 pKa = 11.84ARR71 pKa = 11.84DD72 pKa = 3.72AIEE75 pKa = 3.85VHH77 pKa = 6.95LMLQSLQQSNFCNEE91 pKa = 3.7PWTLADD97 pKa = 3.75TSLEE101 pKa = 4.13RR102 pKa = 11.84YY103 pKa = 7.53KK104 pKa = 10.53TEE106 pKa = 4.97PQGCWKK112 pKa = 10.22KK113 pKa = 9.83NPEE116 pKa = 4.2MVEE119 pKa = 3.58VRR121 pKa = 11.84YY122 pKa = 10.89DD123 pKa = 3.57GDD125 pKa = 3.65RR126 pKa = 11.84EE127 pKa = 4.0NATLHH132 pKa = 5.91TLWQDD137 pKa = 2.71IYY139 pKa = 11.04YY140 pKa = 10.28RR141 pKa = 11.84NSDD144 pKa = 3.81GVWCKK149 pKa = 7.72THH151 pKa = 5.99GQVDD155 pKa = 3.76GHH157 pKa = 6.17GLFYY161 pKa = 10.91LDD163 pKa = 4.39NGCKK167 pKa = 9.56RR168 pKa = 11.84YY169 pKa = 10.03YY170 pKa = 11.01VYY172 pKa = 10.53FADD175 pKa = 4.62DD176 pKa = 3.3AKK178 pKa = 10.7KK179 pKa = 10.51YY180 pKa = 9.54SRR182 pKa = 11.84SGIWEE187 pKa = 3.82VEE189 pKa = 4.17YY190 pKa = 11.01KK191 pKa = 10.91NEE193 pKa = 3.96ILSPLDD199 pKa = 3.47SVTSTTAPAHH209 pKa = 5.22VCRR212 pKa = 11.84PPEE215 pKa = 4.52GPARR219 pKa = 11.84TPARR223 pKa = 11.84GSAGRR228 pKa = 11.84LSTPPEE234 pKa = 4.05PRR236 pKa = 11.84HH237 pKa = 5.71TPWSPQVSTSRR248 pKa = 11.84ADD250 pKa = 3.65VPDD253 pKa = 3.59TTSPLGGPVPALAAQPTLPTAVSRR277 pKa = 11.84SWKK280 pKa = 9.39SATRR284 pKa = 11.84RR285 pKa = 11.84HH286 pKa = 5.74RR287 pKa = 11.84RR288 pKa = 11.84CLGPVTAATPGATDD302 pKa = 3.36TRR304 pKa = 11.84GGAAAAPYY312 pKa = 9.87SAEE315 pKa = 4.56APPSSPTPAEE325 pKa = 4.16GPEE328 pKa = 4.08RR329 pKa = 11.84EE330 pKa = 4.76PEE332 pKa = 4.05RR333 pKa = 11.84QPADD337 pKa = 3.52PGRR340 pKa = 11.84RR341 pKa = 11.84LPPAARR347 pKa = 11.84PNRR350 pKa = 11.84GRR352 pKa = 11.84PGRR355 pKa = 11.84LLRR358 pKa = 11.84GTGDD362 pKa = 3.71CSPALAVLRR371 pKa = 11.84GSGNVLKK378 pKa = 10.53CYY380 pKa = 10.26RR381 pKa = 11.84YY382 pKa = 9.86RR383 pKa = 11.84IKK385 pKa = 10.59KK386 pKa = 7.63KK387 pKa = 9.47HH388 pKa = 5.6RR389 pKa = 11.84RR390 pKa = 11.84LFRR393 pKa = 11.84AVSTTWHH400 pKa = 5.2WTGEE404 pKa = 4.21DD405 pKa = 3.67GADD408 pKa = 3.37RR409 pKa = 11.84AGEE412 pKa = 3.83ARR414 pKa = 11.84LLVWFEE420 pKa = 4.19NPAQRR425 pKa = 11.84SEE427 pKa = 4.23FFEE430 pKa = 4.49SVPMPPSVSAYY441 pKa = 9.82EE442 pKa = 4.15GLGGLL447 pKa = 4.48

Molecular weight: 49.79 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

2336

94

632

389.3

43.27

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.449 ± 0.476

2.568 ± 0.724

5.437 ± 0.21

6.507 ± 0.54

3.81 ± 0.525

7.705 ± 0.758

2.226 ± 0.183

3.767 ± 0.509

3.938 ± 0.649

8.69 ± 0.801

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.584 ± 0.524

3.682 ± 0.753

6.807 ± 1.007

3.981 ± 0.408

7.363 ± 0.839

7.834 ± 0.651

5.95 ± 0.477

5.95 ± 0.764

1.627 ± 0.42

3.082 ± 0.325
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski