Avian HDV-like agent

Taxonomy: Viruses; Ribozyviria; Kolmioviridae; Deltavirus; unclassified Deltavirus

Average proteome isoelectric point is 8.91

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A386CB41|A0A386CB41_9VIRU HDAg-like protein OS=Avian HDV-like agent OX=2364132 PE=3 SV=1
MM1 pKa = 7.4EE2 pKa = 5.31NKK4 pKa = 10.24EE5 pKa = 3.83EE6 pKa = 4.13SQKK9 pKa = 10.88KK10 pKa = 9.09KK11 pKa = 10.34RR12 pKa = 11.84GRR14 pKa = 11.84EE15 pKa = 3.59EE16 pKa = 4.1TLQKK20 pKa = 10.26WVDD23 pKa = 3.09DD24 pKa = 4.17RR25 pKa = 11.84KK26 pKa = 10.5RR27 pKa = 11.84KK28 pKa = 9.91RR29 pKa = 11.84EE30 pKa = 4.02LEE32 pKa = 4.04EE33 pKa = 3.79EE34 pKa = 4.22LEE36 pKa = 4.21KK37 pKa = 10.81LRR39 pKa = 11.84KK40 pKa = 9.46RR41 pKa = 11.84IKK43 pKa = 10.42DD44 pKa = 3.63RR45 pKa = 11.84EE46 pKa = 4.2RR47 pKa = 11.84KK48 pKa = 9.85NPWLGNLKK56 pKa = 10.49GMLKK60 pKa = 9.77QDD62 pKa = 3.27SGGGQEE68 pKa = 4.41KK69 pKa = 10.24KK70 pKa = 10.48KK71 pKa = 10.44EE72 pKa = 3.91AAEE75 pKa = 4.06PMDD78 pKa = 3.76TGEE81 pKa = 4.55SPKK84 pKa = 10.48KK85 pKa = 10.07KK86 pKa = 9.84KK87 pKa = 10.5KK88 pKa = 9.87KK89 pKa = 10.15DD90 pKa = 3.49YY91 pKa = 10.04EE92 pKa = 4.4GLSFTPEE99 pKa = 3.19EE100 pKa = 4.23KK101 pKa = 9.88QRR103 pKa = 11.84HH104 pKa = 4.62KK105 pKa = 10.76RR106 pKa = 11.84KK107 pKa = 9.8CDD109 pKa = 3.46LEE111 pKa = 4.21NKK113 pKa = 9.6KK114 pKa = 10.4KK115 pKa = 10.27QLNAKK120 pKa = 9.14GKK122 pKa = 9.31QLTSQEE128 pKa = 3.78EE129 pKa = 4.26DD130 pKa = 3.07EE131 pKa = 4.73LRR133 pKa = 11.84NLQEE137 pKa = 3.89EE138 pKa = 4.35DD139 pKa = 3.54KK140 pKa = 11.29KK141 pKa = 11.21RR142 pKa = 11.84LLKK145 pKa = 10.48KK146 pKa = 9.86RR147 pKa = 11.84EE148 pKa = 3.73EE149 pKa = 4.05RR150 pKa = 11.84EE151 pKa = 3.88RR152 pKa = 11.84RR153 pKa = 11.84SGGVNLFGSASPSTSGGGNASSTQGLRR180 pKa = 11.84LPWQKK185 pKa = 11.35

Molecular weight: 21.66 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A386CB41|A0A386CB41_9VIRU HDAg-like protein OS=Avian HDV-like agent OX=2364132 PE=3 SV=1
MM1 pKa = 7.4EE2 pKa = 5.31NKK4 pKa = 10.24EE5 pKa = 3.83EE6 pKa = 4.13SQKK9 pKa = 10.88KK10 pKa = 9.09KK11 pKa = 10.34RR12 pKa = 11.84GRR14 pKa = 11.84EE15 pKa = 3.59EE16 pKa = 4.1TLQKK20 pKa = 10.26WVDD23 pKa = 3.09DD24 pKa = 4.17RR25 pKa = 11.84KK26 pKa = 10.5RR27 pKa = 11.84KK28 pKa = 9.91RR29 pKa = 11.84EE30 pKa = 4.02LEE32 pKa = 4.04EE33 pKa = 3.79EE34 pKa = 4.22LEE36 pKa = 4.21KK37 pKa = 10.81LRR39 pKa = 11.84KK40 pKa = 9.46RR41 pKa = 11.84IKK43 pKa = 10.42DD44 pKa = 3.63RR45 pKa = 11.84EE46 pKa = 4.2RR47 pKa = 11.84KK48 pKa = 9.85NPWLGNLKK56 pKa = 10.49GMLKK60 pKa = 9.77QDD62 pKa = 3.27SGGGQEE68 pKa = 4.41KK69 pKa = 10.24KK70 pKa = 10.48KK71 pKa = 10.44EE72 pKa = 3.91AAEE75 pKa = 4.06PMDD78 pKa = 3.76TGEE81 pKa = 4.55SPKK84 pKa = 10.48KK85 pKa = 10.07KK86 pKa = 9.84KK87 pKa = 10.5KK88 pKa = 9.87KK89 pKa = 10.15DD90 pKa = 3.49YY91 pKa = 10.04EE92 pKa = 4.4GLSFTPEE99 pKa = 3.19EE100 pKa = 4.23KK101 pKa = 9.88QRR103 pKa = 11.84HH104 pKa = 4.62KK105 pKa = 10.76RR106 pKa = 11.84KK107 pKa = 9.8CDD109 pKa = 3.46LEE111 pKa = 4.21NKK113 pKa = 9.6KK114 pKa = 10.4KK115 pKa = 10.27QLNAKK120 pKa = 9.14GKK122 pKa = 9.31QLTSQEE128 pKa = 3.78EE129 pKa = 4.26DD130 pKa = 3.07EE131 pKa = 4.73LRR133 pKa = 11.84NLQEE137 pKa = 3.89EE138 pKa = 4.35DD139 pKa = 3.54KK140 pKa = 11.29KK141 pKa = 11.21RR142 pKa = 11.84LLKK145 pKa = 10.48KK146 pKa = 9.86RR147 pKa = 11.84EE148 pKa = 3.73EE149 pKa = 4.05RR150 pKa = 11.84EE151 pKa = 3.88RR152 pKa = 11.84RR153 pKa = 11.84SGGVNLFGSASPSTSGGGNASSTQGLRR180 pKa = 11.84LPWQKK185 pKa = 11.35

Molecular weight: 21.66 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1

0

1

185

185

185

185.0

21.66

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

2.703 ± 0.0

0.541 ± 0.0

4.865 ± 0.0

14.595 ± 0.0

1.081 ± 0.0

8.649 ± 0.0

0.541 ± 0.0

0.541 ± 0.0

18.919 ± 0.0

9.73 ± 0.0

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.622 ± 0.0

4.324 ± 0.0

3.243 ± 0.0

5.946 ± 0.0

9.73 ± 0.0

6.486 ± 0.0

3.243 ± 0.0

1.081 ± 0.0

1.622 ± 0.0

0.541 ± 0.0
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski