Donghicola tyrosinivorans

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Roseobacteraceae; Donghicola

Average proteome isoelectric point is 6.07

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4472 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2T0W7T4|A0A2T0W7T4_9RHOB Uncharacterized protein OS=Donghicola tyrosinivorans OX=1652492 GN=CLV74_1391 PE=4 SV=1
MM1 pKa = 7.14ATSTTFQVMYY11 pKa = 10.02LGQRR15 pKa = 11.84ALIDD19 pKa = 3.42TTQGNNTAEE28 pKa = 4.12NAAGILDD35 pKa = 4.34TYY37 pKa = 11.34GSASDD42 pKa = 4.76PMYY45 pKa = 10.83NWVGTLYY52 pKa = 10.99ADD54 pKa = 4.74YY55 pKa = 11.14LLEE58 pKa = 5.5DD59 pKa = 5.18DD60 pKa = 4.68NNSYY64 pKa = 11.11DD65 pKa = 3.35IDD67 pKa = 3.93NGGGRR72 pKa = 11.84DD73 pKa = 3.26RR74 pKa = 11.84FHH76 pKa = 8.1VNGFGTQEE84 pKa = 3.43FDD86 pKa = 3.89AVAEE90 pKa = 4.07YY91 pKa = 10.35AITLTYY97 pKa = 10.88VDD99 pKa = 4.32GTTAQITAYY108 pKa = 10.27VFQDD112 pKa = 3.76FQGHH116 pKa = 5.28TFLAPEE122 pKa = 4.17TTLNADD128 pKa = 3.49QAALTAKK135 pKa = 9.94PIQSLALTAVTKK147 pKa = 10.84SSGDD151 pKa = 3.39TTAGDD156 pKa = 4.08MIAARR161 pKa = 11.84QTGTYY166 pKa = 7.21KK167 pKa = 10.49TPVDD171 pKa = 3.64GTTGNDD177 pKa = 3.29SMGVGYY183 pKa = 9.23TDD185 pKa = 3.5AQGDD189 pKa = 4.06QITAGNDD196 pKa = 3.3YY197 pKa = 10.78ILAGAGNDD205 pKa = 3.37TVTAGDD211 pKa = 3.77GNDD214 pKa = 3.57FVSGGTGADD223 pKa = 4.33LIYY226 pKa = 10.74GGNGNDD232 pKa = 3.56SLQGNDD238 pKa = 4.27GNDD241 pKa = 3.51TIYY244 pKa = 11.43GEE246 pKa = 4.73LGADD250 pKa = 4.03TIDD253 pKa = 4.28GGAGDD258 pKa = 5.3DD259 pKa = 3.95SILYY263 pKa = 10.65GEE265 pKa = 4.89GADD268 pKa = 3.64VVYY271 pKa = 10.77GGAGNDD277 pKa = 3.88YY278 pKa = 10.79IDD280 pKa = 5.94DD281 pKa = 3.84INGAQLNGANTIYY294 pKa = 10.92GGDD297 pKa = 4.05GNDD300 pKa = 4.63SIYY303 pKa = 10.75TGNDD307 pKa = 2.63GDD309 pKa = 5.43LIYY312 pKa = 10.82GGQGTDD318 pKa = 3.34WIDD321 pKa = 3.61GEE323 pKa = 4.6LGNDD327 pKa = 3.52TVYY330 pKa = 11.24GGADD334 pKa = 3.54NDD336 pKa = 4.28TVMGGAGNDD345 pKa = 3.62SLFGGSGADD354 pKa = 3.94YY355 pKa = 10.84IDD357 pKa = 4.31GGADD361 pKa = 3.06NDD363 pKa = 4.51IIYY366 pKa = 10.88GDD368 pKa = 3.92FNGNTVNINYY378 pKa = 7.62TVSSSSLAASTPAARR393 pKa = 11.84VDD395 pKa = 3.91DD396 pKa = 4.64DD397 pKa = 3.82ATLKK401 pKa = 11.0VSFDD405 pKa = 3.27EE406 pKa = 4.51AATVRR411 pKa = 11.84LTFGLLEE418 pKa = 4.2NFEE421 pKa = 4.68EE422 pKa = 4.61NIISIDD428 pKa = 3.68GVVVDD433 pKa = 4.5IQAMINAGDD442 pKa = 3.74AVLSGGIAVGATGGVTGTAGSSTSGTITFNVPFTSISVDD481 pKa = 3.42HH482 pKa = 6.82TGGGYY487 pKa = 10.56DD488 pKa = 3.87DD489 pKa = 3.87VTVEE493 pKa = 3.95YY494 pKa = 10.01LATGGTYY501 pKa = 8.85TAITDD506 pKa = 3.9YY507 pKa = 11.82ANGATGSYY515 pKa = 10.47AADD518 pKa = 3.38TVGISGSDD526 pKa = 3.54TILGGLGDD534 pKa = 3.72DD535 pKa = 4.73TIWFGAGDD543 pKa = 3.95DD544 pKa = 3.89VVYY547 pKa = 10.83GGDD550 pKa = 3.9GNDD553 pKa = 4.49SIDD556 pKa = 3.81DD557 pKa = 3.72RR558 pKa = 11.84SGDD561 pKa = 3.66GLVGDD566 pKa = 4.77NYY568 pKa = 11.17LDD570 pKa = 4.02GGAGSDD576 pKa = 4.34TIWAGYY582 pKa = 10.48GSDD585 pKa = 3.55TVLGGDD591 pKa = 4.75GNDD594 pKa = 4.17SLHH597 pKa = 6.94GDD599 pKa = 3.46QGNDD603 pKa = 3.33TLSGGLGADD612 pKa = 4.14TLWGDD617 pKa = 3.83AGNDD621 pKa = 3.47VLDD624 pKa = 4.29GGEE627 pKa = 4.3GDD629 pKa = 3.83DD630 pKa = 4.79HH631 pKa = 7.52LVAGAGYY638 pKa = 8.02DD639 pKa = 3.69TIVASSGIDD648 pKa = 3.1NVYY651 pKa = 10.68QFDD654 pKa = 4.99LNDD657 pKa = 4.1DD658 pKa = 3.99NLDD661 pKa = 3.49GFTNHH666 pKa = 6.53QIDD669 pKa = 3.87VSNLTDD675 pKa = 4.24LEE677 pKa = 4.47GNPIRR682 pKa = 11.84WEE684 pKa = 4.08DD685 pKa = 3.56VVVTQNVNNHH695 pKa = 5.7AVLTFPNGEE704 pKa = 4.07QIILQGITADD714 pKa = 3.58QVNDD718 pKa = 3.63KK719 pKa = 11.22LEE721 pKa = 4.92LISIGIPCFTVGTMILTPTGEE742 pKa = 4.48KK743 pKa = 9.41PIEE746 pKa = 4.01MLRR749 pKa = 11.84PGDD752 pKa = 3.63MVVTRR757 pKa = 11.84DD758 pKa = 3.88NGPQPLVWAGSRR770 pKa = 11.84RR771 pKa = 11.84LGAGEE776 pKa = 4.29LARR779 pKa = 11.84HH780 pKa = 6.19PEE782 pKa = 3.85LRR784 pKa = 11.84PIRR787 pKa = 11.84IAPGDD792 pKa = 3.42WAGPRR797 pKa = 11.84GLLVSPQHH805 pKa = 6.29GLYY808 pKa = 10.34AHH810 pKa = 5.68QSEE813 pKa = 5.16RR814 pKa = 11.84GGTDD818 pKa = 2.87KK819 pKa = 11.26LIRR822 pKa = 11.84ATHH825 pKa = 6.41LARR828 pKa = 11.84LKK830 pKa = 10.16GGKK833 pKa = 9.19VRR835 pKa = 11.84VANGVTSVTYY845 pKa = 8.77IHH847 pKa = 6.98LMFEE851 pKa = 3.88EE852 pKa = 4.25HH853 pKa = 6.49QVIFGNGIASEE864 pKa = 4.21SFYY867 pKa = 10.34PGKK870 pKa = 9.93WGLSSLAAPCRR881 pKa = 11.84RR882 pKa = 11.84EE883 pKa = 3.6ILQLFPEE890 pKa = 4.59LAGTDD895 pKa = 3.42VEE897 pKa = 4.32NAYY900 pKa = 10.12GQTAMPFARR909 pKa = 11.84FKK911 pKa = 10.56EE912 pKa = 4.52LPDD915 pKa = 3.47HH916 pKa = 7.08VYY918 pKa = 10.95DD919 pKa = 6.05LSLQTFDD926 pKa = 5.48RR927 pKa = 11.84RR928 pKa = 11.84LLRR931 pKa = 11.84CGG933 pKa = 3.3

Molecular weight: 96.88 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2T0WZW2|A0A2T0WZW2_9RHOB Uncharacterized protein OS=Donghicola tyrosinivorans OX=1652492 GN=CLV74_102144 PE=4 SV=1
MM1 pKa = 7.35KK2 pKa = 9.44RR3 pKa = 11.84TYY5 pKa = 10.31QPSNLVRR12 pKa = 11.84KK13 pKa = 9.18RR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.42GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.37AGRR28 pKa = 11.84KK29 pKa = 8.54ILNARR34 pKa = 11.84RR35 pKa = 11.84ARR37 pKa = 11.84GRR39 pKa = 11.84KK40 pKa = 9.07SLSAA44 pKa = 3.93

Molecular weight: 5.15 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4472

0

4472

1407917

26

18712

314.8

34.2

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.963 ± 0.046

0.919 ± 0.019

6.117 ± 0.043

5.867 ± 0.049

3.699 ± 0.031

8.567 ± 0.063

2.04 ± 0.026

5.353 ± 0.028

3.431 ± 0.039

9.983 ± 0.043

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.896 ± 0.028

2.857 ± 0.029

4.785 ± 0.05

3.438 ± 0.019

6.212 ± 0.056

5.314 ± 0.041

5.679 ± 0.084

7.231 ± 0.039

1.331 ± 0.016

2.318 ± 0.019
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski