Acinetobacter phage YMC-13-01-C62

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Obolenskvirus; Acinetobacter virus AbC62

Average proteome isoelectric point is 6.22

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 84 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A068CDE4|A0A068CDE4_9CAUD Uncharacterized protein OS=Acinetobacter phage YMC-13-01-C62 OX=1505225 GN=BPABA14_00370 PE=4 SV=1
MM1 pKa = 7.44KK2 pKa = 10.33NALILAASVALAACSGKK19 pKa = 9.62PVITGPYY26 pKa = 8.41EE27 pKa = 4.1VEE29 pKa = 4.22SLDD32 pKa = 3.67MEE34 pKa = 5.01HH35 pKa = 6.49NVAAIKK41 pKa = 10.92SGDD44 pKa = 3.47LVLEE48 pKa = 4.32VEE50 pKa = 4.35FEE52 pKa = 4.21GRR54 pKa = 11.84FFKK57 pKa = 10.87DD58 pKa = 3.13GNGFQSWNDD67 pKa = 3.42VEE69 pKa = 4.56VEE71 pKa = 4.22SVNDD75 pKa = 3.26VKK77 pKa = 11.33VYY79 pKa = 11.08NEE81 pKa = 4.28DD82 pKa = 3.88GEE84 pKa = 4.71TEE86 pKa = 4.24NYY88 pKa = 9.74VLPSEE93 pKa = 4.22EE94 pKa = 3.74VSNIVQVIEE103 pKa = 3.93NEE105 pKa = 4.04IAEE108 pKa = 4.36KK109 pKa = 9.83MM110 pKa = 3.72

Molecular weight: 12.07 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A068C8I7|A0A068C8I7_9CAUD Uncharacterized protein OS=Acinetobacter phage YMC-13-01-C62 OX=1505225 GN=BPABA14_00430 PE=4 SV=1
MM1 pKa = 7.31NPIAILIYY9 pKa = 10.03FVLSFVFVAVLYY21 pKa = 10.59LYY23 pKa = 9.68EE24 pKa = 4.28AYY26 pKa = 9.53KK27 pKa = 10.26RR28 pKa = 11.84KK29 pKa = 10.12RR30 pKa = 11.84YY31 pKa = 7.46VQRR34 pKa = 11.84KK35 pKa = 8.76QDD37 pKa = 3.67DD38 pKa = 3.52QRR40 pKa = 11.84KK41 pKa = 8.64FNPIRR46 pKa = 11.84EE47 pKa = 4.37KK48 pKa = 10.67VWWRR52 pKa = 11.84KK53 pKa = 7.81

Molecular weight: 6.73 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

84

0

84

13776

40

698

164.0

18.53

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.947 ± 0.41

1.372 ± 0.152

6.366 ± 0.295

6.765 ± 0.33

4.443 ± 0.218

6.693 ± 0.279

1.662 ± 0.141

7.23 ± 0.27

7.818 ± 0.352

7.84 ± 0.253

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.925 ± 0.173

5.873 ± 0.283

3.085 ± 0.226

3.731 ± 0.213

3.913 ± 0.212

6.294 ± 0.26

5.147 ± 0.316

6.424 ± 0.245

1.43 ± 0.106

4.043 ± 0.23
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski