Lentzea aerocolonigenes (Lechevalieria aerocolonigenes) (Saccharothrix aerocolonigenes)

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Pseudonocardiales; Pseudonocardiaceae; Lentzea

Average proteome isoelectric point is 6.19

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 8237 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0F0GTK8|A0A0F0GTK8_LENAE ABC transporter ATP-binding protein OS=Lentzea aerocolonigenes OX=68170 GN=UK23_26465 PE=4 SV=1
MM1 pKa = 8.04SEE3 pKa = 4.12DD4 pKa = 4.6DD5 pKa = 3.71EE6 pKa = 6.38DD7 pKa = 4.86EE8 pKa = 4.25FAEE11 pKa = 5.26DD12 pKa = 5.66DD13 pKa = 4.05DD14 pKa = 6.46FEE16 pKa = 6.25DD17 pKa = 5.9EE18 pKa = 4.7EE19 pKa = 5.37DD20 pKa = 4.16ADD22 pKa = 4.73DD23 pKa = 5.04LFAVTPEE30 pKa = 3.82PRR32 pKa = 11.84TVCHH36 pKa = 6.43LCGGASYY43 pKa = 10.45IAAPTLAIIGGAPRR57 pKa = 11.84TVDD60 pKa = 3.11NGRR63 pKa = 11.84EE64 pKa = 4.07CPHH67 pKa = 6.82CSGARR72 pKa = 11.84TFNGLVPPLL81 pKa = 3.82

Molecular weight: 8.66 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0F0GWX4|A0A0F0GWX4_LENAE Uncharacterized protein OS=Lentzea aerocolonigenes OX=68170 GN=UK23_23145 PE=4 SV=1
MM1 pKa = 7.53SKK3 pKa = 10.53GKK5 pKa = 8.66RR6 pKa = 11.84TFQPNNRR13 pKa = 11.84RR14 pKa = 11.84RR15 pKa = 11.84AKK17 pKa = 8.7THH19 pKa = 5.15GFRR22 pKa = 11.84LRR24 pKa = 11.84MRR26 pKa = 11.84TRR28 pKa = 11.84AGRR31 pKa = 11.84AILAARR37 pKa = 11.84RR38 pKa = 11.84SKK40 pKa = 10.82GRR42 pKa = 11.84ATLSAA47 pKa = 4.08

Molecular weight: 5.4 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

8237

0

8237

2596602

32

10826

315.2

33.96

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.389 ± 0.034

0.804 ± 0.009

5.993 ± 0.023

5.636 ± 0.027

3.093 ± 0.015

8.866 ± 0.026

2.239 ± 0.012

3.639 ± 0.018

2.622 ± 0.021

10.305 ± 0.035

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.837 ± 0.01

2.315 ± 0.021

5.505 ± 0.02

3.089 ± 0.014

7.194 ± 0.031

5.59 ± 0.019

6.064 ± 0.025

9.139 ± 0.029

1.618 ± 0.013

2.063 ± 0.015
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski