Xylella phage Xfas53

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; unclassified Podoviridae

Average proteome isoelectric point is 7.13

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 45 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|C8CLG8|C8CLG8_9CAUD Gp15 OS=Xylella phage Xfas53 OX=670252 GN=Xfas53_gene15 PE=4 SV=1
MM1 pKa = 7.33TGIGYY6 pKa = 10.41SNYY9 pKa = 9.75NDD11 pKa = 4.13PRR13 pKa = 11.84LQPPQDD19 pKa = 3.45DD20 pKa = 3.7AKK22 pKa = 10.74EE23 pKa = 4.07YY24 pKa = 10.08FAEE27 pKa = 4.14RR28 pKa = 11.84VNARR32 pKa = 11.84VQDD35 pKa = 3.99YY36 pKa = 11.04LSDD39 pKa = 3.73PEE41 pKa = 5.24KK42 pKa = 10.65IEE44 pKa = 4.85EE45 pKa = 4.01ADD47 pKa = 3.36EE48 pKa = 4.3WVDD51 pKa = 3.6GTLSEE56 pKa = 4.05AHH58 pKa = 5.92YY59 pKa = 11.08KK60 pKa = 10.18EE61 pKa = 4.16MEE63 pKa = 4.01IVLADD68 pKa = 3.75LHH70 pKa = 6.86ALPSDD75 pKa = 3.55QLSDD79 pKa = 3.47SDD81 pKa = 4.02VLARR85 pKa = 11.84LYY87 pKa = 11.18ALAEE91 pKa = 4.22VQGLARR97 pKa = 11.84MEE99 pKa = 4.01QLRR102 pKa = 11.84ILAEE106 pKa = 3.83QDD108 pKa = 3.19VKK110 pKa = 11.54EE111 pKa = 4.36EE112 pKa = 3.87MRR114 pKa = 11.84HH115 pKa = 4.83EE116 pKa = 4.37SEE118 pKa = 4.94CFHH121 pKa = 6.16MMWGDD126 pKa = 3.55VMQEE130 pKa = 3.85EE131 pKa = 5.18YY132 pKa = 11.36AA133 pKa = 3.8

Molecular weight: 15.41 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|C8CLG0|C8CLG0_9CAUD DNA polymerase A OS=Xylella phage Xfas53 OX=670252 GN=pol PE=3 SV=1
MM1 pKa = 7.59TIPRR5 pKa = 11.84EE6 pKa = 4.07RR7 pKa = 11.84TIEE10 pKa = 4.14RR11 pKa = 11.84YY12 pKa = 9.51LVAQVRR18 pKa = 11.84AKK20 pKa = 10.4GGEE23 pKa = 3.67IRR25 pKa = 11.84KK26 pKa = 8.85VKK28 pKa = 9.34WGGRR32 pKa = 11.84HH33 pKa = 5.33GAPDD37 pKa = 4.98RR38 pKa = 11.84IAMLPNGRR46 pKa = 11.84TLWVEE51 pKa = 4.21LKK53 pKa = 10.98APGQQCTPHH62 pKa = 5.68QVRR65 pKa = 11.84EE66 pKa = 4.1HH67 pKa = 4.96EE68 pKa = 4.44RR69 pKa = 11.84MRR71 pKa = 11.84GMGQRR76 pKa = 11.84VVVVDD81 pKa = 3.48SLKK84 pKa = 11.21GVDD87 pKa = 3.64EE88 pKa = 4.38VLAA91 pKa = 4.62

Molecular weight: 10.31 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

45

0

45

11483

54

845

255.2

27.96

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.148 ± 0.504

1.245 ± 0.172

5.391 ± 0.218

5.382 ± 0.356

3.074 ± 0.228

7.655 ± 0.355

2.552 ± 0.202

4.049 ± 0.185

4.084 ± 0.32

8.552 ± 0.369

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.282 ± 0.166

3.17 ± 0.225

5.661 ± 0.245

4.572 ± 0.345

6.941 ± 0.375

5.704 ± 0.545

6.261 ± 0.36

6.801 ± 0.301

1.655 ± 0.129

2.822 ± 0.145
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski