Schistosoma mattheei

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Protostomia; Spiralia; Lophotrochozoa; Platyhelminthes; Trematoda; Digenea; Strigeidida; Schistosomatoidea; Schistosomatidae; Schistosoma

Average proteome isoelectric point is 6.85

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 22244 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A183PXU8|A0A183PXU8_9TREM Uncharacterized protein OS=Schistosoma mattheei OX=31246 GN=SMTD_LOCUS19184 PE=4 SV=1
MM1 pKa = 7.15KK2 pKa = 10.33ASYY5 pKa = 10.75RR6 pKa = 11.84NLSKK10 pKa = 10.7FYY12 pKa = 10.88LSEE15 pKa = 4.07NYY17 pKa = 9.75NEE19 pKa = 4.04KK20 pKa = 10.38FYY22 pKa = 10.6PHH24 pKa = 6.93FNSLEE29 pKa = 4.36CIYY32 pKa = 10.82HH33 pKa = 6.65PEE35 pKa = 4.12FPDD38 pKa = 3.32LVDD41 pKa = 4.45IVEE44 pKa = 4.79EE45 pKa = 5.42DD46 pKa = 5.33DD47 pKa = 6.63DD48 pKa = 7.45DD49 pKa = 7.67DD50 pKa = 7.7DD51 pKa = 7.66DD52 pKa = 7.68DD53 pKa = 7.42DD54 pKa = 7.55DD55 pKa = 7.56DD56 pKa = 7.7DD57 pKa = 5.75IDD59 pKa = 4.64EE60 pKa = 5.67DD61 pKa = 5.33DD62 pKa = 5.72DD63 pKa = 5.08VDD65 pKa = 4.75IDD67 pKa = 4.37GDD69 pKa = 3.88DD70 pKa = 5.05DD71 pKa = 5.04EE72 pKa = 7.03VDD74 pKa = 3.55EE75 pKa = 5.57QDD77 pKa = 4.85NNNNNNNNDD86 pKa = 4.26RR87 pKa = 11.84IKK89 pKa = 11.07DD90 pKa = 3.95AITSSNVNCDD100 pKa = 3.48PRR102 pKa = 11.84SVNCPCYY109 pKa = 10.72SNDD112 pKa = 3.26NIEE115 pKa = 4.02YY116 pKa = 10.82DD117 pKa = 4.8EE118 pKa = 5.64IPDD121 pKa = 3.76IQDD124 pKa = 2.95KK125 pKa = 11.14SITFQEE131 pKa = 4.79GNDD134 pKa = 3.6GVTWDD139 pKa = 3.61MKK141 pKa = 10.79FNQSEE146 pKa = 4.24NILIKK151 pKa = 10.53EE152 pKa = 4.01VTLCRR157 pKa = 11.84KK158 pKa = 10.16KK159 pKa = 10.35PDD161 pKa = 3.47EE162 pKa = 4.33KK163 pKa = 11.03FGLTLCYY170 pKa = 10.14RR171 pKa = 11.84QGDD174 pKa = 4.07TCNTSCNVYY183 pKa = 10.42VGEE186 pKa = 4.26

Molecular weight: 21.57 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A183PH97|A0A183PH97_9TREM Uncharacterized protein OS=Schistosoma mattheei OX=31246 GN=SMTD_LOCUS13734 PE=4 SV=1
MM1 pKa = 8.02RR2 pKa = 11.84LHH4 pKa = 5.18QLRR7 pKa = 11.84WLGHH11 pKa = 4.94VLLMPNHH18 pKa = 6.5RR19 pKa = 11.84LLRR22 pKa = 11.84RR23 pKa = 11.84AMFSGVRR30 pKa = 11.84VGWKK34 pKa = 9.39KK35 pKa = 10.99ASGGQTKK42 pKa = 7.77TT43 pKa = 3.3

Molecular weight: 5.03 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

22244

0

22244

5383249

29

4483

242.0

27.32

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.479 ± 0.02

2.129 ± 0.011

5.235 ± 0.016

5.449 ± 0.018

3.843 ± 0.014

4.359 ± 0.023

2.93 ± 0.011

6.638 ± 0.021

5.664 ± 0.019

9.657 ± 0.025

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.151 ± 0.009

7.129 ± 0.029

4.514 ± 0.019

4.313 ± 0.016

4.959 ± 0.017

10.133 ± 0.035

6.508 ± 0.059

5.368 ± 0.017

1.014 ± 0.007

3.234 ± 0.011
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski