Luteimonas sp. FCS-9

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteimonas; unclassified Luteimonas

Average proteome isoelectric point is 6.61

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3200 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0H1ASJ2|A0A0H1ASJ2_9GAMM DUF3298 domain-containing protein OS=Luteimonas sp. FCS-9 OX=1547516 GN=WQ56_04070 PE=4 SV=1
MM1 pKa = 7.5HH2 pKa = 7.32IAAPDD7 pKa = 3.64ALRR10 pKa = 11.84AAFLPPPHH18 pKa = 7.35DD19 pKa = 4.08PQPAAKK25 pKa = 10.08ADD27 pKa = 3.99TPEE30 pKa = 3.61QTPFVRR36 pKa = 11.84GEE38 pKa = 4.18GDD40 pKa = 3.02RR41 pKa = 11.84HH42 pKa = 5.04TVDD45 pKa = 4.65PNDD48 pKa = 3.66IQQDD52 pKa = 4.35GYY54 pKa = 11.19GSCAVLSTLHH64 pKa = 6.76TIAQHH69 pKa = 6.35DD70 pKa = 4.03PSVIQDD76 pKa = 3.99MIQDD80 pKa = 4.22NGDD83 pKa = 2.95GTYY86 pKa = 10.17TVTFQEE92 pKa = 4.39KK93 pKa = 10.25VEE95 pKa = 3.98ILGFTFFKK103 pKa = 10.34PVEE106 pKa = 4.3VTVSGPFTGGAANPADD122 pKa = 3.37VGANGEE128 pKa = 4.47EE129 pKa = 4.15VWPAIIEE136 pKa = 3.88AAYY139 pKa = 8.84AQQYY143 pKa = 10.14KK144 pKa = 10.82GGDD147 pKa = 3.38LTYY150 pKa = 9.32EE151 pKa = 4.21TGVMPADD158 pKa = 3.35VMEE161 pKa = 5.74RR162 pKa = 11.84ILGADD167 pKa = 3.3AQTAGTGEE175 pKa = 4.12VSAEE179 pKa = 3.87QMSQRR184 pKa = 11.84LADD187 pKa = 3.98GEE189 pKa = 4.41ATVAWTPGFKK199 pKa = 10.49DD200 pKa = 5.25DD201 pKa = 5.22DD202 pKa = 4.93GNWLPEE208 pKa = 3.81ITEE211 pKa = 4.06EE212 pKa = 3.93QQALIEE218 pKa = 4.55HH219 pKa = 6.18YY220 pKa = 10.58GIAGGHH226 pKa = 6.75AYY228 pKa = 9.82AVSEE232 pKa = 4.4VIPAGTSYY240 pKa = 11.47VDD242 pKa = 3.35PTTGEE247 pKa = 4.22SVVASEE253 pKa = 5.49DD254 pKa = 4.14VIVLDD259 pKa = 4.49NPWGSSDD266 pKa = 3.76VVMPYY271 pKa = 10.55SDD273 pKa = 3.65YY274 pKa = 11.07QEE276 pKa = 4.17VYY278 pKa = 10.1GWVSSAATEE287 pKa = 3.96

Molecular weight: 30.52 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0H1ANH3|A0A0H1ANH3_9GAMM Uncharacterized protein OS=Luteimonas sp. FCS-9 OX=1547516 GN=WQ56_08935 PE=4 SV=1
MM1 pKa = 7.86PLPSATRR8 pKa = 11.84APARR12 pKa = 11.84CRR14 pKa = 11.84RR15 pKa = 11.84PARR18 pKa = 11.84PPRR21 pKa = 11.84PRR23 pKa = 11.84PRR25 pKa = 11.84PRR27 pKa = 11.84PGPPGCRR34 pKa = 11.84TSRR37 pKa = 11.84PRR39 pKa = 11.84AWPRR43 pKa = 11.84PARR46 pKa = 11.84RR47 pKa = 11.84TPRR50 pKa = 11.84AASPAGRR57 pKa = 11.84PGGNGRR63 pKa = 11.84AVRR66 pKa = 11.84LRR68 pKa = 11.84TDD70 pKa = 3.08AAA72 pKa = 3.9

Molecular weight: 7.83 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3200

0

3200

1065100

41

2810

332.8

35.92

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

14.355 ± 0.08

0.766 ± 0.011

6.438 ± 0.038

4.982 ± 0.04

3.286 ± 0.029

8.984 ± 0.038

2.222 ± 0.022

3.843 ± 0.028

1.933 ± 0.033

10.709 ± 0.056

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.989 ± 0.019

2.089 ± 0.03

5.625 ± 0.041

3.395 ± 0.027

8.453 ± 0.045

4.549 ± 0.032

4.93 ± 0.025

7.707 ± 0.037

1.562 ± 0.021

2.184 ± 0.024
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski