Amino acid dipepetide frequency for Pochonia chlamydosporia 170

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10^-3.

For more information see sequence space article on Wikipedia.

	Ala	Cys	Asp	Glu	Phe	Gly	His	Ile	Lys	Leu	Met	Asn	Pro	Gln	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
Ala	9.068AlaAla: 9.068 ± 0.064	1.203AlaCys: 1.203 ± 0.016	4.224AlaAsp: 4.224 ± 0.024	4.9AlaGlu: 4.9 ± 0.044	3.183AlaPhe: 3.183 ± 0.023	5.76AlaGly: 5.76 ± 0.037	1.726AlaHis: 1.726 ± 0.016	4.463AlaIle: 4.463 ± 0.028	4.317AlaLys: 4.317 ± 0.033	7.623AlaLeu: 7.623 ± 0.042	2.093AlaMet: 2.093 ± 0.016	3.087AlaAsn: 3.087 ± 0.024	4.281AlaPro: 4.281 ± 0.036	3.275AlaGln: 3.275 ± 0.026	4.674AlaArg: 4.674 ± 0.029	7.085AlaSer: 7.085 ± 0.041	5.312AlaThr: 5.312 ± 0.031	5.526AlaVal: 5.526 ± 0.03	1.241AlaTrp: 1.241 ± 0.014	2.161AlaTyr: 2.161 ± 0.022	0.0AlaXaa: 0.0 ± 0.0
Cys	1.051CysAla: 1.051 ± 0.013	0.31CysCys: 0.31 ± 0.009	0.746CysAsp: 0.746 ± 0.011	0.644CysGlu: 0.644 ± 0.011	0.601CysPhe: 0.601 ± 0.01	1.049CysGly: 1.049 ± 0.014	0.39CysHis: 0.39 ± 0.008	0.781CysIle: 0.781 ± 0.011	0.613CysLys: 0.613 ± 0.01	1.393CysLeu: 1.393 ± 0.017	0.313CysMet: 0.313 ± 0.007	0.527CysAsn: 0.527 ± 0.009	0.732CysPro: 0.732 ± 0.012	0.553CysGln: 0.553 ± 0.01	0.902CysArg: 0.902 ± 0.014	1.048CysSer: 1.048 ± 0.014	0.785CysThr: 0.785 ± 0.011	0.883CysVal: 0.883 ± 0.013	0.24CysTrp: 0.24 ± 0.007	0.392CysTyr: 0.392 ± 0.008	0.0CysXaa: 0.0 ± 0.0
Asp	4.773AspAla: 4.773 ± 0.028	0.707AspCys: 0.707 ± 0.011	4.338AspAsp: 4.338 ± 0.036	4.436AspGlu: 4.436 ± 0.03	2.188AspPhe: 2.188 ± 0.021	4.33AspGly: 4.33 ± 0.029	1.27AspHis: 1.27 ± 0.016	3.156AspIle: 3.156 ± 0.023	2.712AspLys: 2.712 ± 0.028	4.875AspLeu: 4.875 ± 0.025	1.395AspMet: 1.395 ± 0.014	2.063AspAsn: 2.063 ± 0.02	2.991AspPro: 2.991 ± 0.026	1.922AspGln: 1.922 ± 0.016	2.998AspArg: 2.998 ± 0.03	4.071AspSer: 4.071 ± 0.028	3.059AspThr: 3.059 ± 0.022	3.874AspVal: 3.874 ± 0.027	0.924AspTrp: 0.924 ± 0.011	1.543AspTyr: 1.543 ± 0.014	0.0AspXaa: 0.0 ± 0.0
Glu	5.236GluAla: 5.236 ± 0.049	0.675GluCys: 0.675 ± 0.012	3.954GluAsp: 3.954 ± 0.03	4.72GluGlu: 4.72 ± 0.05	1.965GluPhe: 1.965 ± 0.019	3.348GluGly: 3.348 ± 0.025	1.356GluHis: 1.356 ± 0.014	2.797GluIle: 2.797 ± 0.023	3.434GluLys: 3.434 ± 0.028	5.078GluLeu: 5.078 ± 0.03	1.464GluMet: 1.464 ± 0.015	2.185GluAsn: 2.185 ± 0.02	2.691GluPro: 2.691 ± 0.032	2.426GluGln: 2.426 ± 0.022	3.68GluArg: 3.68 ± 0.036	4.17GluSer: 4.17 ± 0.03	3.366GluThr: 3.366 ± 0.026	3.386GluVal: 3.386 ± 0.026	0.883GluTrp: 0.883 ± 0.011	1.659GluTyr: 1.659 ± 0.018	0.0GluXaa: 0.0 ± 0.0
Phe	3.063PheAla: 3.063 ± 0.023	0.624PheCys: 0.624 ± 0.01	2.332PheAsp: 2.332 ± 0.02	2.095PheGlu: 2.095 ± 0.019	1.628PhePhe: 1.628 ± 0.018	2.906PheGly: 2.906 ± 0.026	0.925PheHis: 0.925 ± 0.014	1.869PheIle: 1.869 ± 0.017	1.594PheLys: 1.594 ± 0.016	3.437PheLeu: 3.437 ± 0.025	0.827PheMet: 0.827 ± 0.011	1.499PheAsn: 1.499 ± 0.015	1.889PhePro: 1.889 ± 0.018	1.414PheGln: 1.414 ± 0.016	1.955PheArg: 1.955 ± 0.018	2.904PheSer: 2.904 ± 0.023	2.19PheThr: 2.19 ± 0.02	2.455PheVal: 2.455 ± 0.023	0.687PheTrp: 0.687 ± 0.011	1.087PheTyr: 1.087 ± 0.012	0.0PheXaa: 0.0 ± 0.0
Gly	5.236GlyAla: 5.236 ± 0.032	0.987GlyCys: 0.987 ± 0.013	3.731GlyAsp: 3.731 ± 0.028	3.514GlyGlu: 3.514 ± 0.029	2.753GlyPhe: 2.753 ± 0.023	5.68GlyGly: 5.68 ± 0.058	1.848GlyHis: 1.848 ± 0.022	3.69GlyIle: 3.69 ± 0.029	3.636GlyLys: 3.636 ± 0.025	6.104GlyLeu: 6.104 ± 0.038	1.683GlyMet: 1.683 ± 0.016	2.767GlyAsn: 2.767 ± 0.029	3.253GlyPro: 3.253 ± 0.028	2.712GlyGln: 2.712 ± 0.023	4.183GlyArg: 4.183 ± 0.033	5.751GlySer: 5.751 ± 0.036	4.002GlyThr: 4.002 ± 0.031	4.405GlyVal: 4.405 ± 0.029	1.235GlyTrp: 1.235 ± 0.017	2.143GlyTyr: 2.143 ± 0.019	0.0GlyXaa: 0.0 ± 0.0
His	1.794HisAla: 1.794 ± 0.018	0.389HisCys: 0.389 ± 0.008	1.42HisAsp: 1.42 ± 0.017	1.343HisGlu: 1.343 ± 0.014	0.948HisPhe: 0.948 ± 0.012	1.883HisGly: 1.883 ± 0.02	0.899HisHis: 0.899 ± 0.019	1.293HisIle: 1.293 ± 0.013	1.024HisLys: 1.024 ± 0.013	2.258HisLeu: 2.258 ± 0.019	0.535HisMet: 0.535 ± 0.01	0.909HisAsn: 0.909 ± 0.013	1.56HisPro: 1.56 ± 0.017	1.061HisGln: 1.061 ± 0.014	1.56HisArg: 1.56 ± 0.018	1.829HisSer: 1.829 ± 0.02	1.263HisThr: 1.263 ± 0.015	1.508HisVal: 1.508 ± 0.016	0.373HisTrp: 0.373 ± 0.007	0.676HisTyr: 0.676 ± 0.011	0.0HisXaa: 0.0 ± 0.0
Ile	4.27IleAla: 4.27 ± 0.027	0.847IleCys: 0.847 ± 0.012	2.879IleAsp: 2.879 ± 0.019	2.712IleGlu: 2.712 ± 0.022	2.009IlePhe: 2.009 ± 0.022	3.289IleGly: 3.289 ± 0.025	1.245IleHis: 1.245 ± 0.013	2.574IleIle: 2.574 ± 0.024	2.228IleLys: 2.228 ± 0.02	4.64IleLeu: 4.64 ± 0.03	1.074IleMet: 1.074 ± 0.012	1.88IleAsn: 1.88 ± 0.016	2.934IlePro: 2.934 ± 0.023	2.0IleGln: 2.0 ± 0.021	2.91IleArg: 2.91 ± 0.025	3.874IleSer: 3.874 ± 0.023	2.901IleThr: 2.901 ± 0.025	3.222IleVal: 3.222 ± 0.024	0.81IleTrp: 0.81 ± 0.012	1.38IleTyr: 1.38 ± 0.016	0.0IleXaa: 0.0 ± 0.0
Lys	4.325LysAla: 4.325 ± 0.03	0.586LysCys: 0.586 ± 0.009	2.986LysAsp: 2.986 ± 0.027	3.145LysGlu: 3.145 ± 0.027	1.567LysPhe: 1.567 ± 0.018	3.084LysGly: 3.084 ± 0.029	1.2LysHis: 1.2 ± 0.016	2.249LysIle: 2.249 ± 0.02	3.217LysLys: 3.217 ± 0.037	4.361LysLeu: 4.361 ± 0.028	1.09LysMet: 1.09 ± 0.014	1.8LysAsn: 1.8 ± 0.018	2.752LysPro: 2.752 ± 0.027	1.928LysGln: 1.928 ± 0.019	3.363LysArg: 3.363 ± 0.027	3.669LysSer: 3.669 ± 0.027	2.955LysThr: 2.955 ± 0.022	2.879LysVal: 2.879 ± 0.025	0.754LysTrp: 0.754 ± 0.011	1.455LysTyr: 1.455 ± 0.015	0.0LysXaa: 0.0 ± 0.0
Leu	7.896LeuAla: 7.896 ± 0.04	1.36LeuCys: 1.36 ± 0.016	5.258LeuAsp: 5.258 ± 0.032	5.22LeuGlu: 5.22 ± 0.036	3.314LeuPhe: 3.314 ± 0.028	6.035LeuGly: 6.035 ± 0.04	2.298LeuHis: 2.298 ± 0.019	3.962LeuIle: 3.962 ± 0.032	4.143LeuLys: 4.143 ± 0.028	8.451LeuLeu: 8.451 ± 0.052	1.842LeuMet: 1.842 ± 0.019	3.153LeuAsn: 3.153 ± 0.023	5.329LeuPro: 5.329 ± 0.033	3.926LeuGln: 3.926 ± 0.033	5.773LeuArg: 5.773 ± 0.035	7.249LeuSer: 7.249 ± 0.039	4.797LeuThr: 4.797 ± 0.029	5.564LeuVal: 5.564 ± 0.03	1.287LeuTrp: 1.287 ± 0.014	2.356LeuTyr: 2.356 ± 0.02	0.0LeuXaa: 0.0 ± 0.0
Met	2.378MetAla: 2.378 ± 0.02	0.272MetCys: 0.272 ± 0.006	1.338MetAsp: 1.338 ± 0.014	1.32MetGlu: 1.32 ± 0.014	0.776MetPhe: 0.776 ± 0.011	1.545MetGly: 1.545 ± 0.016	0.503MetHis: 0.503 ± 0.01	1.004MetIle: 1.004 ± 0.012	1.076MetLys: 1.076 ± 0.013	1.938MetLeu: 1.938 ± 0.018	0.614MetMet: 0.614 ± 0.011	0.853MetAsn: 0.853 ± 0.012	1.342MetPro: 1.342 ± 0.013	0.89MetGln: 0.89 ± 0.013	1.333MetArg: 1.333 ± 0.013	1.927MetSer: 1.927 ± 0.017	1.366MetThr: 1.366 ± 0.014	1.406MetVal: 1.406 ± 0.016	0.289MetTrp: 0.289 ± 0.007	0.579MetTyr: 0.579 ± 0.009	0.0MetXaa: 0.0 ± 0.0
Asn	3.163AsnAla: 3.163 ± 0.026	0.538AsnCys: 0.538 ± 0.009	2.057AsnAsp: 2.057 ± 0.019	2.013AsnGlu: 2.013 ± 0.017	1.42AsnPhe: 1.42 ± 0.016	3.196AsnGly: 3.196 ± 0.034	0.918AsnHis: 0.918 ± 0.012	2.12AsnIle: 2.12 ± 0.017	1.727AsnLys: 1.727 ± 0.017	3.316AsnLeu: 3.316 ± 0.023	0.921AsnMet: 0.921 ± 0.011	1.587AsnAsn: 1.587 ± 0.021	2.333AsnPro: 2.333 ± 0.022	1.382AsnGln: 1.382 ± 0.016	2.045AsnArg: 2.045 ± 0.019	2.849AsnSer: 2.849 ± 0.022	2.248AsnThr: 2.248 ± 0.02	2.407AsnVal: 2.407 ± 0.019	0.628AsnTrp: 0.628 ± 0.011	1.046AsnTyr: 1.046 ± 0.014	0.0AsnXaa: 0.0 ± 0.0
Pro	4.75ProAla: 4.75 ± 0.036	0.638ProCys: 0.638 ± 0.012	3.166ProAsp: 3.166 ± 0.022	3.495ProGlu: 3.495 ± 0.03	2.006ProPhe: 2.006 ± 0.016	3.92ProGly: 3.92 ± 0.028	1.268ProHis: 1.268 ± 0.015	2.451ProIle: 2.451 ± 0.019	2.638ProLys: 2.638 ± 0.023	4.535ProLeu: 4.535 ± 0.028	1.104ProMet: 1.104 ± 0.014	2.223ProAsn: 2.223 ± 0.022	4.596ProPro: 4.596 ± 0.052	2.374ProGln: 2.374 ± 0.026	3.242ProArg: 3.242 ± 0.027	5.503ProSer: 5.503 ± 0.04	3.74ProThr: 3.74 ± 0.032	3.506ProVal: 3.506 ± 0.027	0.781ProTrp: 0.781 ± 0.013	1.4ProTyr: 1.4 ± 0.016	0.0ProXaa: 0.0 ± 0.0
Gln	3.431GlnAla: 3.431 ± 0.027	0.502GlnCys: 0.502 ± 0.008	2.209GlnAsp: 2.209 ± 0.018	2.272GlnGlu: 2.272 ± 0.021	1.352GlnPhe: 1.352 ± 0.015	2.53GlnGly: 2.53 ± 0.023	1.147GlnHis: 1.147 ± 0.015	1.927GlnIle: 1.927 ± 0.018	1.985GlnLys: 1.985 ± 0.02	3.672GlnLeu: 3.672 ± 0.024	0.936GlnMet: 0.936 ± 0.014	1.623GlnAsn: 1.623 ± 0.023	2.52GlnPro: 2.52 ± 0.027	2.45GlnGln: 2.45 ± 0.046	2.649GlnArg: 2.649 ± 0.023	3.141GlnSer: 3.141 ± 0.025	2.399GlnThr: 2.399 ± 0.019	2.286GlnVal: 2.286 ± 0.023	0.595GlnTrp: 0.595 ± 0.01	1.201GlnTyr: 1.201 ± 0.015	0.0GlnXaa: 0.0 ± 0.0
Arg	4.471ArgAla: 4.471 ± 0.028	0.834ArgCys: 0.834 ± 0.013	3.49ArgAsp: 3.49 ± 0.034	3.578ArgGlu: 3.578 ± 0.031	2.11ArgPhe: 2.11 ± 0.019	3.749ArgGly: 3.749 ± 0.03	1.681ArgHis: 1.681 ± 0.019	2.895ArgIle: 2.895 ± 0.024	3.331ArgLys: 3.331 ± 0.026	5.572ArgLeu: 5.572 ± 0.034	1.346ArgMet: 1.346 ± 0.014	2.311ArgAsn: 2.311 ± 0.019	3.35ArgPro: 3.35 ± 0.028	2.799ArgGln: 2.799 ± 0.026	5.157ArgArg: 5.157 ± 0.041	4.62ArgSer: 4.62 ± 0.036	3.299ArgThr: 3.299 ± 0.021	3.379ArgVal: 3.379 ± 0.026	1.014ArgTrp: 1.014 ± 0.012	1.678ArgTyr: 1.678 ± 0.018	0.0ArgXaa: 0.0 ± 0.0
Ser	6.354SerAla: 6.354 ± 0.037	1.041SerCys: 1.041 ± 0.014	4.135SerAsp: 4.135 ± 0.032	3.949SerGlu: 3.949 ± 0.029	3.014SerPhe: 3.014 ± 0.023	5.589SerGly: 5.589 ± 0.036	2.01SerHis: 2.01 ± 0.018	4.059SerIle: 4.059 ± 0.027	3.835SerLys: 3.835 ± 0.032	7.048SerLeu: 7.048 ± 0.032	1.798SerMet: 1.798 ± 0.018	3.058SerAsn: 3.058 ± 0.023	5.114SerPro: 5.114 ± 0.038	3.419SerGln: 3.419 ± 0.026	5.001SerArg: 5.001 ± 0.036	8.118SerSer: 8.118 ± 0.066	5.446SerThr: 5.446 ± 0.038	4.542SerVal: 4.542 ± 0.028	1.275SerTrp: 1.275 ± 0.016	2.051SerTyr: 2.051 ± 0.018	0.0SerXaa: 0.0 ± 0.0
Thr	5.186ThrAla: 5.186 ± 0.033	0.814ThrCys: 0.814 ± 0.012	2.907ThrAsp: 2.907 ± 0.023	3.067ThrGlu: 3.067 ± 0.025	2.213ThrPhe: 2.213 ± 0.018	4.245ThrGly: 4.245 ± 0.031	1.285ThrHis: 1.285 ± 0.016	3.185ThrIle: 3.185 ± 0.027	2.825ThrLys: 2.825 ± 0.022	5.211ThrLeu: 5.211 ± 0.033	1.266ThrMet: 1.266 ± 0.013	2.216ThrAsn: 2.216 ± 0.023	4.053ThrPro: 4.053 ± 0.032	2.142ThrGln: 2.142 ± 0.021	3.163ThrArg: 3.163 ± 0.024	5.267ThrSer: 5.267 ± 0.038	4.313ThrThr: 4.313 ± 0.048	3.778ThrVal: 3.778 ± 0.03	0.923ThrTrp: 0.923 ± 0.013	1.607ThrTyr: 1.607 ± 0.016	0.0ThrXaa: 0.0 ± 0.0
Val	5.39ValAla: 5.39 ± 0.035	0.932ValCys: 0.932 ± 0.013	3.854ValAsp: 3.854 ± 0.025	3.715ValGlu: 3.715 ± 0.029	2.508ValPhe: 2.508 ± 0.024	4.09ValGly: 4.09 ± 0.028	1.403ValHis: 1.403 ± 0.015	2.966ValIle: 2.966 ± 0.024	2.996ValLys: 2.996 ± 0.025	5.647ValLeu: 5.647 ± 0.035	1.393ValMet: 1.393 ± 0.013	2.352ValAsn: 2.352 ± 0.021	3.547ValPro: 3.547 ± 0.024	2.446ValGln: 2.446 ± 0.019	3.436ValArg: 3.436 ± 0.026	4.685ValSer: 4.685 ± 0.027	3.623ValThr: 3.623 ± 0.028	4.477ValVal: 4.477 ± 0.033	0.915ValTrp: 0.915 ± 0.014	1.705ValTyr: 1.705 ± 0.018	0.0ValXaa: 0.0 ± 0.0
Trp	1.245TrpAla: 1.245 ± 0.016	0.228TrpCys: 0.228 ± 0.006	0.962TrpAsp: 0.962 ± 0.012	0.863TrpGlu: 0.863 ± 0.013	0.592TrpPhe: 0.592 ± 0.009	0.983TrpGly: 0.983 ± 0.014	0.409TrpHis: 0.409 ± 0.008	0.821TrpIle: 0.821 ± 0.011	0.866TrpLys: 0.866 ± 0.012	1.44TrpLeu: 1.44 ± 0.017	0.405TrpMet: 0.405 ± 0.008	0.662TrpAsn: 0.662 ± 0.01	0.658TrpPro: 0.658 ± 0.011	0.631TrpGln: 0.631 ± 0.011	1.031TrpArg: 1.031 ± 0.014	1.098TrpSer: 1.098 ± 0.012	1.019TrpThr: 1.019 ± 0.015	0.972TrpVal: 0.972 ± 0.013	0.327TrpTrp: 0.327 ± 0.008	0.459TrpTyr: 0.459 ± 0.009	0.0TrpXaa: 0.0 ± 0.0
Tyr	2.121TyrAla: 2.121 ± 0.021	0.465TyrCys: 0.465 ± 0.009	1.638TyrAsp: 1.638 ± 0.018	1.472TyrGlu: 1.472 ± 0.016	1.238TyrPhe: 1.238 ± 0.014	2.101TyrGly: 2.101 ± 0.02	0.744TyrHis: 0.744 ± 0.011	1.414TyrIle: 1.414 ± 0.016	1.168TyrLys: 1.168 ± 0.015	2.615TyrLeu: 2.615 ± 0.022	0.649TyrMet: 0.649 ± 0.009	1.16TyrAsn: 1.16 ± 0.014	1.408TyrPro: 1.408 ± 0.014	1.077TyrGln: 1.077 ± 0.014	1.613TyrArg: 1.613 ± 0.015	2.0TyrSer: 2.0 ± 0.02	1.581TyrThr: 1.581 ± 0.018	1.623TyrVal: 1.623 ± 0.016	0.491TyrTrp: 0.491 ± 0.011	0.937TyrTyr: 0.937 ± 0.014	0.0TyrXaa: 0.0 ± 0.0
Xaa	0.0XaaAla: 0.0 ± 0.0	0.0XaaCys: 0.0 ± 0.0	0.0XaaAsp: 0.0 ± 0.0	0.0XaaGlu: 0.0 ± 0.0	0.0XaaPhe: 0.0 ± 0.0	0.0XaaGly: 0.0 ± 0.0	0.0XaaHis: 0.0 ± 0.0	0.0XaaIle: 0.0 ± 0.0	0.0XaaLys: 0.0 ± 0.0	0.0XaaLeu: 0.0 ± 0.0	0.0XaaMet: 0.0 ± 0.0	0.0XaaAsn: 0.0 ± 0.0	0.0XaaPro: 0.0 ± 0.0	0.0XaaGln: 0.0 ± 0.0	0.0XaaArg: 0.0 ± 0.0	0.0XaaSer: 0.0 ± 0.0	0.0XaaThr: 0.0 ± 0.0	0.0XaaVal: 0.0 ± 0.0	0.0XaaTrp: 0.0 ± 0.0	0.0XaaTyr: 0.0 ± 0.0	0.002XaaXaa: 0.002 ± 0.001

Statistics based on 14143 proteins (6505054 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944

Contact: Lukasz P. Kozlowski

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