Gammapapillomavirus 18

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Gammapapillomavirus

Average proteome isoelectric point is 6.23

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2D2AM25|A0A2D2AM25_9PAPI Minor capsid protein L2 OS=Gammapapillomavirus 18 OX=1513263 GN=L2 PE=3 SV=1
MM1 pKa = 7.18SVSRR5 pKa = 11.84NKK7 pKa = 10.32RR8 pKa = 11.84DD9 pKa = 3.62TVEE12 pKa = 4.29NLYY15 pKa = 10.59KK16 pKa = 10.31SCKK19 pKa = 10.05LGGDD23 pKa = 3.95CPPDD27 pKa = 3.3VVNKK31 pKa = 9.97VEE33 pKa = 4.12QKK35 pKa = 9.21TLADD39 pKa = 3.33ILLQAFSSVLYY50 pKa = 10.76LGGLGFGTGKK60 pKa = 10.81GSTGTVGVRR69 pKa = 11.84PLPEE73 pKa = 3.97VPPIRR78 pKa = 11.84IPTEE82 pKa = 3.95TVPEE86 pKa = 4.8EE87 pKa = 4.16IPLAPIKK94 pKa = 10.17PKK96 pKa = 10.46TPITVGQGRR105 pKa = 11.84RR106 pKa = 11.84PFSVPLDD113 pKa = 3.73TIGAGFRR120 pKa = 11.84PVDD123 pKa = 3.55PSGSRR128 pKa = 11.84TIDD131 pKa = 3.44VIDD134 pKa = 4.32PSSPSVITPRR144 pKa = 11.84EE145 pKa = 4.12SLPDD149 pKa = 3.72TIITIGQPNLEE160 pKa = 4.37TGDD163 pKa = 4.1SVVTDD168 pKa = 4.23LNIITDD174 pKa = 3.69TTSIISHH181 pKa = 5.72PTVIQGVEE189 pKa = 4.06EE190 pKa = 4.01NVAILTVTPADD201 pKa = 3.9PPPTRR206 pKa = 11.84VKK208 pKa = 9.98FTLPEE213 pKa = 3.72QSPNISIEE221 pKa = 3.98SLAGHH226 pKa = 6.08VEE228 pKa = 3.62PTYY231 pKa = 11.22DD232 pKa = 3.58VFVDD236 pKa = 4.92PVASGEE242 pKa = 4.15DD243 pKa = 3.29IYY245 pKa = 11.21FGEE248 pKa = 5.51DD249 pKa = 3.12IPLEE253 pKa = 4.47PINPRR258 pKa = 11.84LEE260 pKa = 4.2FEE262 pKa = 4.29IEE264 pKa = 4.12EE265 pKa = 4.79PPQSSTPEE273 pKa = 3.62QRR275 pKa = 11.84LQRR278 pKa = 11.84AFSRR282 pKa = 11.84ARR284 pKa = 11.84EE285 pKa = 4.16FYY287 pKa = 10.38SRR289 pKa = 11.84HH290 pKa = 4.52IQQVRR295 pKa = 11.84TRR297 pKa = 11.84NLNLLGDD304 pKa = 3.82VARR307 pKa = 11.84AIEE310 pKa = 4.38FGFEE314 pKa = 3.7NPAFDD319 pKa = 5.25SEE321 pKa = 4.22ITLEE325 pKa = 4.32FEE327 pKa = 5.23RR328 pKa = 11.84EE329 pKa = 4.24VNDD332 pKa = 4.25LRR334 pKa = 11.84AAPDD338 pKa = 3.12IDD340 pKa = 3.7FTDD343 pKa = 3.14IQTISRR349 pKa = 11.84PYY351 pKa = 10.09IEE353 pKa = 4.77STPEE357 pKa = 3.37GTVRR361 pKa = 11.84VSRR364 pKa = 11.84LGTRR368 pKa = 11.84AGVRR372 pKa = 11.84TRR374 pKa = 11.84RR375 pKa = 11.84GTVLSQNVHH384 pKa = 5.72YY385 pKa = 10.16YY386 pKa = 10.85YY387 pKa = 10.43DD388 pKa = 3.64ISPIPSTEE396 pKa = 4.15TIEE399 pKa = 5.17LSTFTPEE406 pKa = 4.24TVVDD410 pKa = 3.6TSVNPNTEE418 pKa = 3.96SVFINEE424 pKa = 4.02IEE426 pKa = 4.13EE427 pKa = 4.31LPEE430 pKa = 4.91DD431 pKa = 4.0VLLDD435 pKa = 3.68SYY437 pKa = 11.25TEE439 pKa = 4.25SFNDD443 pKa = 3.17AHH445 pKa = 6.98LLLEE449 pKa = 4.55ATDD452 pKa = 4.19EE453 pKa = 4.14EE454 pKa = 5.16GEE456 pKa = 4.28RR457 pKa = 11.84YY458 pKa = 9.57QIPVVASDD466 pKa = 3.61TVKK469 pKa = 10.65VFVYY473 pKa = 10.26DD474 pKa = 3.65YY475 pKa = 11.12GSDD478 pKa = 3.57IIVAEE483 pKa = 4.56PGSSEE488 pKa = 4.64SPFPVPNIPLTPLQPPANILIVSDD512 pKa = 4.71DD513 pKa = 4.32FYY515 pKa = 11.53LHH517 pKa = 7.37PSLQRR522 pKa = 11.84KK523 pKa = 9.12RR524 pKa = 11.84KK525 pKa = 9.4RR526 pKa = 11.84KK527 pKa = 9.54RR528 pKa = 11.84LDD530 pKa = 3.15YY531 pKa = 10.84FF532 pKa = 3.88

Molecular weight: 58.73 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2D2ALY4|A0A2D2ALY4_9PAPI Protein E7 OS=Gammapapillomavirus 18 OX=1513263 GN=E7 PE=3 SV=1
MM1 pKa = 7.01NQADD5 pKa = 3.91LTKK8 pKa = 10.64RR9 pKa = 11.84SDD11 pKa = 3.51ALQEE15 pKa = 3.97RR16 pKa = 11.84LMNLYY21 pKa = 10.39EE22 pKa = 4.71EE23 pKa = 5.11GAQTIDD29 pKa = 3.53AQIEE33 pKa = 3.79HH34 pKa = 6.52WKK36 pKa = 10.21IIKK39 pKa = 8.71QQYY42 pKa = 6.29ITYY45 pKa = 9.3YY46 pKa = 8.2YY47 pKa = 10.64ARR49 pKa = 11.84KK50 pKa = 9.88EE51 pKa = 4.16GFKK54 pKa = 10.93KK55 pKa = 10.59LGLQILPTYY64 pKa = 10.24VVSEE68 pKa = 4.28YY69 pKa = 10.22KK70 pKa = 10.6AKK72 pKa = 10.54EE73 pKa = 4.11AIQQILLLEE82 pKa = 4.25SLKK85 pKa = 10.7KK86 pKa = 10.49SQFGNEE92 pKa = 3.75PWTLSEE98 pKa = 4.22TSAEE102 pKa = 4.18LTLTPPRR109 pKa = 11.84YY110 pKa = 9.81SFKK113 pKa = 10.45KK114 pKa = 9.82DD115 pKa = 3.32PYY117 pKa = 11.1VVDD120 pKa = 3.09VWFDD124 pKa = 3.83NNPEE128 pKa = 3.84NSFPYY133 pKa = 9.96TNWNKK138 pKa = 9.98IYY140 pKa = 10.52YY141 pKa = 9.48QDD143 pKa = 4.16EE144 pKa = 4.12QEE146 pKa = 3.95HH147 pKa = 4.4WHH149 pKa = 5.7RR150 pKa = 11.84AEE152 pKa = 4.15GKK154 pKa = 9.59VDD156 pKa = 3.21INGLYY161 pKa = 10.3FVDD164 pKa = 3.89INGDD168 pKa = 3.04RR169 pKa = 11.84NYY171 pKa = 10.5FVVFAPDD178 pKa = 3.17VEE180 pKa = 4.83RR181 pKa = 11.84YY182 pKa = 7.51STTGLWTVNFKK193 pKa = 10.68NQTISSVDD201 pKa = 3.26SSQTRR206 pKa = 11.84VSDD209 pKa = 3.51ISPQGSVSSSRR220 pKa = 11.84DD221 pKa = 3.35TIQRR225 pKa = 11.84PTTTSSRR232 pKa = 11.84GSEE235 pKa = 4.06GEE237 pKa = 3.73EE238 pKa = 3.63RR239 pKa = 11.84SPHH242 pKa = 5.17STTPSSPDD250 pKa = 2.94LRR252 pKa = 11.84GGQRR256 pKa = 11.84RR257 pKa = 11.84RR258 pKa = 11.84RR259 pKa = 11.84QRR261 pKa = 11.84EE262 pKa = 3.51SSPRR266 pKa = 11.84GRR268 pKa = 11.84SKK270 pKa = 10.59RR271 pKa = 11.84RR272 pKa = 11.84RR273 pKa = 11.84EE274 pKa = 3.87EE275 pKa = 3.74EE276 pKa = 3.89ATSGVAPGEE285 pKa = 4.22VGRR288 pKa = 11.84GSVTVPRR295 pKa = 11.84RR296 pKa = 11.84GLGRR300 pKa = 11.84IEE302 pKa = 4.39RR303 pKa = 11.84LTEE306 pKa = 3.72EE307 pKa = 4.87ARR309 pKa = 11.84DD310 pKa = 3.64PPIIFVKK317 pKa = 10.83GGANNLKK324 pKa = 9.87CWRR327 pKa = 11.84NRR329 pKa = 11.84CQKK332 pKa = 8.97TNRR335 pKa = 11.84LYY337 pKa = 10.62TVMSTVFRR345 pKa = 11.84YY346 pKa = 9.48PGTEE350 pKa = 3.44LGHH353 pKa = 6.64RR354 pKa = 11.84MVIGFRR360 pKa = 11.84DD361 pKa = 3.71FDD363 pKa = 3.59QRR365 pKa = 11.84TLFLKK370 pKa = 10.03TITFPKK376 pKa = 9.84GCTYY380 pKa = 10.65SLGRR384 pKa = 11.84IDD386 pKa = 4.88SLL388 pKa = 4.34

Molecular weight: 44.72 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

2258

96

597

376.3

42.84

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.606 ± 0.367

2.834 ± 1.293

6.289 ± 0.432

6.82 ± 0.607

5.049 ± 0.62

5.27 ± 0.639

1.284 ± 0.134

5.624 ± 0.699

5.359 ± 0.985

8.902 ± 0.967

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.55 ± 0.451

5.226 ± 0.606

6.289 ± 1.327

4.429 ± 0.433

5.802 ± 0.936

6.776 ± 0.81

6.643 ± 0.725

6.289 ± 0.732

1.151 ± 0.375

3.809 ± 0.63
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski